Variant report
| Variant | rs74067185 |
|---|---|
| Chromosome Location | chr14:83262554-83262555 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SEL1L-4 | chr14:83262417-83262565 | ENSG00000258683 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10484138 | 1.00[EUR][1000 genomes] |
| rs12587660 | 1.00[EUR][1000 genomes] |
| rs12590200 | 1.00[EUR][1000 genomes] |
| rs17117324 | 1.00[EUR][1000 genomes] |
| rs17117330 | 1.00[EUR][1000 genomes] |
| rs17117384 | 1.00[EUR][1000 genomes] |
| rs17117392 | 1.00[EUR][1000 genomes] |
| rs17117436 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35768970 | 1.00[EUR][1000 genomes] |
| rs60697834 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7150950 | 1.00[EUR][1000 genomes] |
| rs7157030 | 1.00[EUR][1000 genomes] |
| rs73343607 | 1.00[EUR][1000 genomes] |
| rs73343612 | 1.00[EUR][1000 genomes] |
| rs73343613 | 1.00[EUR][1000 genomes] |
| rs73360736 | 1.00[EUR][1000 genomes] |
| rs73360750 | 1.00[EUR][1000 genomes] |
| rs73360772 | 1.00[EUR][1000 genomes] |
| rs73360774 | 1.00[EUR][1000 genomes] |
| rs73360778 | 1.00[EUR][1000 genomes] |
| rs73360779 | 1.00[EUR][1000 genomes] |
| rs74067029 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74067169 | 1.00[EUR][1000 genomes] |
| rs74067184 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74067200 | 1.00[EUR][1000 genomes] |
| rs74067202 | 1.00[EUR][1000 genomes] |
| rs74069203 | 1.00[EUR][1000 genomes] |
| rs74069241 | 1.00[EUR][1000 genomes] |
| rs74069243 | 1.00[EUR][1000 genomes] |
| rs74069244 | 1.00[EUR][1000 genomes] |
| rs74069245 | 1.00[EUR][1000 genomes] |
| rs74069248 | 1.00[EUR][1000 genomes] |
| rs74069249 | 1.00[EUR][1000 genomes] |
| rs74069251 | 1.00[EUR][1000 genomes] |
| rs8009617 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902124 | chr14:83165520-83282163 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:83262000-83262800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr14:83262400-83262800 | Bivalent Enhancer | Cortex derived primary cultured neurospheres | brain |
