Variant report

Variant	rs74069245
Chromosome Location	chr14:83272458-83272459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10484138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12587660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12590200	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17117324	1.00[EUR][1000 genomes]
rs17117330	1.00[EUR][1000 genomes]
rs17117384	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17117392	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17117436	1.00[EUR][1000 genomes]
rs35768970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60697834	1.00[EUR][1000 genomes]
rs7150950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157030	1.00[EUR][1000 genomes]
rs73343607	1.00[EUR][1000 genomes]
rs73343612	1.00[EUR][1000 genomes]
rs73343613	1.00[EUR][1000 genomes]
rs73360736	1.00[EUR][1000 genomes]
rs73360750	1.00[EUR][1000 genomes]
rs73360772	1.00[EUR][1000 genomes]
rs73360774	1.00[EUR][1000 genomes]
rs73360778	1.00[EUR][1000 genomes]
rs73360779	1.00[EUR][1000 genomes]
rs74067029	1.00[EUR][1000 genomes]
rs74067169	1.00[EUR][1000 genomes]
rs74067184	1.00[EUR][1000 genomes]
rs74067185	1.00[EUR][1000 genomes]
rs74067200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74067202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74069203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74069241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74069243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74069244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74069248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74069249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74069251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8009617	1.00[EUR][1000 genomes]
rs880732	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902124	chr14:83165520-83282163	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:83266400-83274200	Weak transcription	Aorta	Aorta
2	chr14:83271200-83273000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr14:83271400-83273600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr14:83271600-83272600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr14:83272000-83273400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:83272000-83273400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:83272200-83272800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr14:83272200-83272800	Enhancers	Brain Germinal Matrix	brain
9	chr14:83272200-83273400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:83272200-83273400	Enhancers	Brain Angular Gyrus	brain
11	chr14:83272200-83273400	Enhancers	Brain Hippocampus Middle	brain
12	chr14:83272200-83273400	Enhancers	Brain Substantia Nigra	brain
13	chr14:83272400-83272600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr14:83272400-83273000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
15	chr14:83272400-83273800	Enhancers	HUES64 Cell Line	embryonic stem cell

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