Variant report
| Variant | rs73360779 |
|---|---|
| Chromosome Location | chr14:83116284-83116285 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TSHR-5 | chr14:83115921-83116488 | NONHSAT038089 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10484138 | 1.00[EUR][1000 genomes] |
| rs12587660 | 1.00[EUR][1000 genomes] |
| rs12590200 | 1.00[EUR][1000 genomes] |
| rs17117324 | 1.00[EUR][1000 genomes] |
| rs17117330 | 1.00[EUR][1000 genomes] |
| rs17117384 | 1.00[EUR][1000 genomes] |
| rs17117392 | 1.00[EUR][1000 genomes] |
| rs17117436 | 1.00[EUR][1000 genomes] |
| rs2135583 | 1.00[EUR][1000 genomes] |
| rs2888257 | 1.00[EUR][1000 genomes] |
| rs35768970 | 1.00[EUR][1000 genomes] |
| rs60697834 | 1.00[EUR][1000 genomes] |
| rs7150950 | 1.00[EUR][1000 genomes] |
| rs7157030 | 1.00[EUR][1000 genomes] |
| rs7157748 | 1.00[EUR][1000 genomes] |
| rs73343607 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73343612 | 1.00[EUR][1000 genomes] |
| rs73343613 | 1.00[EUR][1000 genomes] |
| rs73360736 | 1.00[EUR][1000 genomes] |
| rs73360750 | 1.00[EUR][1000 genomes] |
| rs73360772 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73360774 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73360778 | 1.00[EUR][1000 genomes] |
| rs74067029 | 1.00[EUR][1000 genomes] |
| rs74067169 | 1.00[EUR][1000 genomes] |
| rs74067184 | 1.00[EUR][1000 genomes] |
| rs74067185 | 1.00[EUR][1000 genomes] |
| rs74067200 | 1.00[EUR][1000 genomes] |
| rs74067202 | 1.00[EUR][1000 genomes] |
| rs74069203 | 1.00[EUR][1000 genomes] |
| rs74069241 | 1.00[EUR][1000 genomes] |
| rs74069243 | 1.00[EUR][1000 genomes] |
| rs74069244 | 1.00[EUR][1000 genomes] |
| rs74069245 | 1.00[EUR][1000 genomes] |
| rs74069248 | 1.00[EUR][1000 genomes] |
| rs74069249 | 1.00[EUR][1000 genomes] |
| rs74069251 | 1.00[EUR][1000 genomes] |
| rs8009617 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054303 | chr14:83018016-83258920 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2758364 | chr14:83035707-83146797 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2760002 | chr14:83035707-83146797 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2751286 | chr14:83066038-83203657 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
