Variant report

Variant	rs74084870
Chromosome Location	chr13:52029762-52029763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:52029221-52031973	K562	blood:	n/a	n/a
2	POLR2A	chr13:52029747-52029940	MCF-7	breast:	n/a	n/a
3	POLR2A	chr13:52029690-52029983	MCF-7	breast:	n/a	n/a
4	POLR2A	chr13:52029666-52029788	ProgFib	skin:	n/a	n/a
5	POLR2A	chr13:52029296-52029895	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr13:52029683-52030014	K562	blood:	n/a	n/a
7	POLR2A	chr13:52029598-52029969	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr13:52029509-52031916	Hela-S3	cervix:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:52028897..52030915-chr13:52042337..52044657,2	MCF-7	breast:
2	chr13:52025794..52034237-chr13:52040132..52048046,20	K562	blood:
3	chr13:52025577..52029967-chr13:52343918..52348772,7	MCF-7	breast:
4	chr13:52024267..52031024-chr13:52038927..52044194,9	MCF-7	breast:
5	chr13:51980509..51983180-chr13:52028617..52030168,2	K562	blood:
6	chr13:52024284..52029908-chr13:52069886..52073128,6	K562	blood:
7	chr13:52029332..52032158-chr13:52157074..52159871,2	K562	blood:
8	chr13:52022042..52032158-chr13:52153162..52160287,46	K562	blood:
9	chr13:52015950..52029988-chr13:52150583..52166755,85	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDFY2-2	chr13:52027277-52030240	NONHSAT033912

No data

Variant related genes	Relation type
INTS6	TF binding region
RPS4XP16	TF binding region
ENSG00000102796	Chromatin interaction
ENSG00000139668	Chromatin interaction
ENSG00000206920	Chromatin interaction
ENSG00000229906	Chromatin interaction
ENSG00000243900	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12323252	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55678657	1.00[AMR][1000 genomes]
rs74084824	1.00[AMR][1000 genomes]
rs74084851	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9285178	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591404	1.00[AMR][1000 genomes]
rs9591406	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9596511	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9596512	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9596514	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9596515	1.00[AMR][1000 genomes]
rs9596525	1.00[AMR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52028000-52029800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:52028400-52029800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:52028400-52029800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:52028400-52030200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:52028600-52029800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:52028600-52029800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr13:52028600-52029800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr13:52028600-52029800	Weak transcription	Colonic Mucosa	Colon
9	chr13:52028600-52029800	Weak transcription	Placenta	Placenta
10	chr13:52028600-52030000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr13:52028600-52030200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr13:52028600-52030200	Weak transcription	HSMM	muscle
13	chr13:52028600-52030400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr13:52028600-52030400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:52028600-52030400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr13:52028600-52032200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:52028600-52034000	Weak transcription	Aorta	Aorta
18	chr13:52028600-52036000	Weak transcription	HSMMtube	muscle
19	chr13:52028800-52029800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr13:52028800-52030000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr13:52028800-52030800	ZNF genes & repeats	Dnd41	blood
22	chr13:52028800-52031000	ZNF genes & repeats	Fetal Thymus	thymus
23	chr13:52028800-52031600	Genic enhancers	Primary T cells fromperipheralblood	blood
24	chr13:52028800-52032000	Weak transcription	Osteobl	bone
25	chr13:52029000-52029800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:52029000-52029800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:52029000-52029800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr13:52029000-52029800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr13:52029000-52030000	Genic enhancers	Stomach Smooth Muscle	stomach
30	chr13:52029000-52030600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr13:52029000-52031000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr13:52029000-52031400	Weak transcription	Fetal Kidney	kidney
33	chr13:52029000-52031800	Weak transcription	NHDF-Ad	bronchial
34	chr13:52029000-52032600	Weak transcription	NHLF	lung
35	chr13:52029000-52033400	Weak transcription	NHEK	skin
36	chr13:52029000-52034000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr13:52029200-52029800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:52029200-52029800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr13:52029200-52029800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
40	chr13:52029200-52030000	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr13:52029200-52030000	Weak transcription	Brain Substantia Nigra	brain
42	chr13:52029200-52030200	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr13:52029200-52030400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:52029200-52030800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr13:52029200-52030800	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr13:52029200-52030800	Strong transcription	Psoas Muscle	Psoas
47	chr13:52029200-52031000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
48	chr13:52029200-52031000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr13:52029200-52031000	Strong transcription	A549	lung
50	chr13:52029200-52031400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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