Variant report

Variant	rs9285178
Chromosome Location	chr13:52052856-52052857
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52051780..52053612-chr13:52158341..52160107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139668	Chromatin interaction

rs_ID	r²[population]
rs12323252	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55678657	1.00[AMR][1000 genomes]
rs74084824	1.00[AMR][1000 genomes]
rs74084851	1.00[AMR][1000 genomes]
rs74084865	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084870	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9563058	1.00[MKK][hapmap]
rs9591404	1.00[AMR][1000 genomes]
rs9591406	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs9596511	1.00[AMR][1000 genomes]
rs9596512	1.00[AMR][1000 genomes]
rs9596514	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs9596515	1.00[AMR][1000 genomes]
rs9596525	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52050400-52053800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:52050600-52053000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:52050600-52053000	Weak transcription	A549	lung
4	chr13:52050800-52053800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:52052000-52053200	Weak transcription	Stomach Mucosa	stomach
6	chr13:52052200-52053800	Flanking Active TSS	HepG2	liver
7	chr13:52052600-52053000	Flanking Active TSS	Liver	Liver
8	chr13:52052600-52053000	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr13:52052600-52053000	Enhancers	Pancreas	Pancrea
10	chr13:52052600-52053000	Enhancers	NHEK	skin
11	chr13:52052600-52053200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:52052600-52053200	Enhancers	Brain Substantia Nigra	brain
13	chr13:52052600-52053600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:52052600-52053600	Enhancers	Brain Cingulate Gyrus	brain
15	chr13:52052600-52053600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr13:52052600-52053800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:52052600-52053800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:52052600-52053800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:52052600-52053800	Enhancers	NHLF	lung
20	chr13:52052600-52054000	Enhancers	HMEC	breast
21	chr13:52052600-52054000	Enhancers	NHDF-Ad	bronchial
22	chr13:52052800-52053200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:52052800-52053200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr13:52052800-52053600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr13:52052800-52053800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:52052800-52053800	Enhancers	NH-A	brain
27	chr13:52052800-52053800	Enhancers	Osteobl	bone
28	chr13:52052800-52054000	Enhancers	HSMM	muscle

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