Variant report

Variant	rs74105959
Chromosome Location	chr13:87804014-87804015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10444617	0.83[AFR][1000 genomes]
rs10444618	0.83[AFR][1000 genomes]
rs10444619	0.83[AFR][1000 genomes]
rs11618967	1.00[ASN][1000 genomes]
rs16951130	1.00[ASN][1000 genomes]
rs16951137	1.00[ASN][1000 genomes]
rs4476033	0.88[AFR][1000 genomes]
rs55756093	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56198489	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56204352	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56402506	1.00[ASN][1000 genomes]
rs56723125	1.00[ASN][1000 genomes]
rs57386857	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58594104	1.00[ASN][1000 genomes]
rs58658894	1.00[ASN][1000 genomes]
rs58716013	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59760565	1.00[ASN][1000 genomes]
rs59946799	0.83[AFR][1000 genomes]
rs60032361	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60048216	1.00[ASN][1000 genomes]
rs60617913	0.87[AMR][1000 genomes]
rs60680591	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60842880	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61192808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61579481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73560623	1.00[ASN][1000 genomes]
rs73562438	1.00[ASN][1000 genomes]
rs73562440	1.00[ASN][1000 genomes]
rs73562442	1.00[ASN][1000 genomes]
rs73565478	1.00[ASN][1000 genomes]
rs73566067	1.00[ASN][1000 genomes]
rs73567603	1.00[ASN][1000 genomes]
rs74103203	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103206	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74103209	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103210	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103211	0.80[AMR][1000 genomes]
rs74103212	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103272	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103275	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103295	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74103296	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103302	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74105610	1.00[ASN][1000 genomes]
rs74105916	0.88[AFR][1000 genomes]
rs74105922	0.84[AFR][1000 genomes]
rs74105943	0.83[AFR][1000 genomes]
rs74105957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302046	0.83[AFR][1000 genomes]
rs9516522	0.84[AFR][1000 genomes]
rs9516523	0.84[AFR][1000 genomes]
rs9516525	0.84[AFR][1000 genomes]
rs9524783	0.87[AFR][1000 genomes]
rs9524793	0.84[AFR][1000 genomes]
rs9524798	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037473	chr13:87760891-87805163	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87803400-87806000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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