Variant report

Variant	rs74126309
Chromosome Location	chr1:152096367-152096368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56024264	1.00[AMR][1000 genomes]
rs56106510	1.00[AMR][1000 genomes]
rs56124007	1.00[AMR][1000 genomes]
rs56244386	1.00[AMR][1000 genomes]
rs57272962	1.00[AMR][1000 genomes]
rs57934636	1.00[AMR][1000 genomes]
rs58788896	1.00[AMR][1000 genomes]
rs58823849	1.00[AMR][1000 genomes]
rs60525930	1.00[AMR][1000 genomes]
rs60709044	1.00[AMR][1000 genomes]
rs74126716	1.00[AMR][1000 genomes]
rs74126718	1.00[AMR][1000 genomes]
rs74126763	1.00[AMR][1000 genomes]
rs74127703	1.00[AMR][1000 genomes]
rs74127885	1.00[AMR][1000 genomes]
rs74127887	1.00[AMR][1000 genomes]
rs74127894	1.00[AMR][1000 genomes]
rs74127895	1.00[AMR][1000 genomes]
rs74129414	1.00[AMR][1000 genomes]
rs74129429	1.00[AMR][1000 genomes]
rs74129447	1.00[AMR][1000 genomes]
rs74129458	1.00[AMR][1000 genomes]
rs74129459	1.00[AMR][1000 genomes]
rs74129507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv872442	chr1:152054120-152187641	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152092400-152097200	Weak transcription	Spleen	Spleen

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