Variant report

Variant	rs74132479
Chromosome Location	chr1:180341625-180341626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180334858..180337165-chr1:180338509..180341951,3	K562	blood:
2	chr1:180334858..180336416-chr1:180338509..180341789,3	K562	blood:
3	chr1:180338174..180341966-chr1:180380791..180382462,3	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10913962	0.84[AFR][1000 genomes]
rs55723772	1.00[AFR][1000 genomes]
rs55817049	1.00[AFR][1000 genomes]
rs55823559	1.00[AFR][1000 genomes]
rs55915848	1.00[AFR][1000 genomes]
rs55952863	1.00[AFR][1000 genomes]
rs56081661	1.00[AFR][1000 genomes]
rs56120807	0.84[AFR][1000 genomes]
rs56395008	1.00[AFR][1000 genomes]
rs57115648	1.00[AFR][1000 genomes]
rs57226792	1.00[AFR][1000 genomes]
rs57465003	1.00[AFR][1000 genomes]
rs57757716	1.00[AFR][1000 genomes]
rs57897169	1.00[AFR][1000 genomes]
rs58105846	1.00[AFR][1000 genomes]
rs58275341	0.91[AFR][1000 genomes]
rs58386646	1.00[AFR][1000 genomes]
rs58483603	1.00[AFR][1000 genomes]
rs58521362	1.00[AFR][1000 genomes]
rs58565991	1.00[AFR][1000 genomes]
rs58613938	1.00[AFR][1000 genomes]
rs59083148	1.00[AFR][1000 genomes]
rs59378647	0.91[AFR][1000 genomes]
rs59702178	1.00[AFR][1000 genomes]
rs59752237	1.00[AFR][1000 genomes]
rs60449684	1.00[AFR][1000 genomes]
rs61508057	1.00[AFR][1000 genomes]
rs61647778	1.00[AFR][1000 genomes]
rs61694354	1.00[AFR][1000 genomes]
rs74132469	1.00[AFR][1000 genomes]
rs74132470	1.00[AFR][1000 genomes]
rs74132471	1.00[AFR][1000 genomes]
rs74132474	1.00[AFR][1000 genomes]
rs74132480	1.00[AFR][1000 genomes]
rs74132806	1.00[AFR][1000 genomes]
rs74132809	1.00[AFR][1000 genomes]
rs74132812	1.00[AFR][1000 genomes]
rs74132839	1.00[AFR][1000 genomes]
rs74132840	1.00[AFR][1000 genomes]
rs74132841	1.00[AFR][1000 genomes]
rs74132842	1.00[AFR][1000 genomes]
rs74132843	1.00[AFR][1000 genomes]
rs74132847	1.00[AFR][1000 genomes]
rs74132848	1.00[AFR][1000 genomes]
rs74132850	1.00[AFR][1000 genomes]
rs74132906	1.00[AFR][1000 genomes]
rs74132908	1.00[AFR][1000 genomes]
rs74132909	1.00[AFR][1000 genomes]
rs74132910	1.00[AFR][1000 genomes]
rs74132913	1.00[AFR][1000 genomes]
rs74132916	1.00[AFR][1000 genomes]
rs74132920	1.00[AFR][1000 genomes]
rs74132948	0.91[AFR][1000 genomes]
rs74135060	1.00[AFR][1000 genomes]
rs74135187	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003739	chr1:180027760-180483292	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv535217	chr1:180027760-180483292	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv527918	chr1:180279710-180443808	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1013716	chr1:180287338-180477072	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
5	nsv535221	chr1:180287338-180477072	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	esv2762200	chr1:180300936-180493841	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
7	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180309600-180345400	Weak transcription	Primary T cells from cord blood	blood
2	chr1:180310000-180348200	Weak transcription	Primary B cells from cord blood	blood
3	chr1:180314000-180345800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:180330200-180345400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:180330600-180349000	Weak transcription	HMEC	breast
6	chr1:180333000-180356200	Weak transcription	Ovary	ovary
7	chr1:180333600-180343400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:180334200-180348000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:180335800-180343200	Weak transcription	Fetal Lung	lung
10	chr1:180335800-180349000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:180336200-180344400	Weak transcription	Psoas Muscle	Psoas
12	chr1:180336200-180347600	Weak transcription	NHDF-Ad	bronchial
13	chr1:180337000-180349000	Weak transcription	Esophagus	oesophagus
14	chr1:180337800-180348000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:180338000-180342200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:180338400-180345000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:180338400-180348400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:180338600-180347800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:180338600-180347800	Weak transcription	Aorta	Aorta
20	chr1:180338600-180348000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:180338600-180349000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:180338600-180349000	Weak transcription	Left Ventricle	heart
23	chr1:180339000-180342600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:180339600-180343200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:180339600-180345400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:180339600-180349000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:180340200-180343200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:180340400-180345400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr1:180340800-180342000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr1:180340800-180343200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:180340800-180347600	Weak transcription	HSMM	muscle
32	chr1:180341000-180343000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:180341200-180401400	Weak transcription	Osteobl	bone
34	chr1:180341600-180342200	Enhancers	Fetal Intestine Small	intestine
35	chr1:180341600-180343800	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links