Variant report

Variant	rs74132806
Chromosome Location	chr1:180356424-180356425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180354979..180356991-chr1:180360915..180363474,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10913962	0.84[AFR][1000 genomes]
rs55723772	1.00[AFR][1000 genomes]
rs55817049	1.00[AFR][1000 genomes]
rs55823559	1.00[AFR][1000 genomes]
rs55915848	1.00[AFR][1000 genomes]
rs55952863	1.00[AFR][1000 genomes]
rs56081661	1.00[AFR][1000 genomes]
rs56120807	0.84[AFR][1000 genomes]
rs56395008	1.00[AFR][1000 genomes]
rs57115648	1.00[AFR][1000 genomes]
rs57226792	1.00[AFR][1000 genomes]
rs57465003	1.00[AFR][1000 genomes]
rs57757716	1.00[AFR][1000 genomes]
rs57897169	1.00[AFR][1000 genomes]
rs58105846	1.00[AFR][1000 genomes]
rs58275341	0.91[AFR][1000 genomes]
rs58386646	1.00[AFR][1000 genomes]
rs58483603	1.00[AFR][1000 genomes]
rs58521362	1.00[AFR][1000 genomes]
rs58565991	1.00[AFR][1000 genomes]
rs58613938	1.00[AFR][1000 genomes]
rs59083148	1.00[AFR][1000 genomes]
rs59378647	0.91[AFR][1000 genomes]
rs59702178	1.00[AFR][1000 genomes]
rs59752237	1.00[AFR][1000 genomes]
rs60449684	1.00[AFR][1000 genomes]
rs61508057	1.00[AFR][1000 genomes]
rs61647778	1.00[AFR][1000 genomes]
rs61694354	1.00[AFR][1000 genomes]
rs74132469	1.00[AFR][1000 genomes]
rs74132470	1.00[AFR][1000 genomes]
rs74132471	1.00[AFR][1000 genomes]
rs74132474	1.00[AFR][1000 genomes]
rs74132479	1.00[AFR][1000 genomes]
rs74132480	1.00[AFR][1000 genomes]
rs74132809	1.00[AFR][1000 genomes]
rs74132812	1.00[AFR][1000 genomes]
rs74132839	1.00[AFR][1000 genomes]
rs74132840	1.00[AFR][1000 genomes]
rs74132841	1.00[AFR][1000 genomes]
rs74132842	1.00[AFR][1000 genomes]
rs74132843	1.00[AFR][1000 genomes]
rs74132847	1.00[AFR][1000 genomes]
rs74132848	1.00[AFR][1000 genomes]
rs74132850	1.00[AFR][1000 genomes]
rs74132906	1.00[AFR][1000 genomes]
rs74132908	1.00[AFR][1000 genomes]
rs74132909	1.00[AFR][1000 genomes]
rs74132910	1.00[AFR][1000 genomes]
rs74132913	1.00[AFR][1000 genomes]
rs74132916	1.00[AFR][1000 genomes]
rs74132920	1.00[AFR][1000 genomes]
rs74132948	0.91[AFR][1000 genomes]
rs74135060	1.00[AFR][1000 genomes]
rs74135187	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003739	chr1:180027760-180483292	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv535217	chr1:180027760-180483292	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv527918	chr1:180279710-180443808	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1013716	chr1:180287338-180477072	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
5	nsv535221	chr1:180287338-180477072	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	esv2762200	chr1:180300936-180493841	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
7	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
8	nsv1009742	chr1:180342203-180385459	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180341200-180401400	Weak transcription	Osteobl	bone
2	chr1:180348200-180382600	Weak transcription	Pancreas	Pancrea
3	chr1:180349400-180356600	Weak transcription	Aorta	Aorta
4	chr1:180349400-180364200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:180349400-180407000	Weak transcription	Esophagus	oesophagus
6	chr1:180351600-180378400	Weak transcription	HSMM	muscle
7	chr1:180352400-180381400	Weak transcription	Hela-S3	cervix
8	chr1:180352800-180399400	Weak transcription	Fetal Thymus	thymus
9	chr1:180353800-180357000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:180354200-180364200	Weak transcription	NH-A	brain
11	chr1:180354600-180374000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:180354800-180358600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:180354800-180386600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:180355000-180360600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:180355200-180357000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:180355200-180364800	Weak transcription	K562	blood
17	chr1:180355200-180402600	Weak transcription	HMEC	breast
18	chr1:180355400-180361200	Weak transcription	Small Intestine	intestine
19	chr1:180355400-180378800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:180355600-180356800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:180355600-180378400	Weak transcription	Placenta	Placenta
22	chr1:180355600-180390800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:180356000-180357000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:180356200-180356600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr1:180356200-180356800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:180356200-180356800	ZNF genes & repeats	Fetal Muscle Leg	muscle
27	chr1:180356200-180356800	ZNF genes & repeats	GM12878-XiMat	blood
28	chr1:180356200-180357000	Strong transcription	Primary B cells from cord blood	blood
29	chr1:180356200-180357000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr1:180356200-180357000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:180356200-180357000	Strong transcription	Fetal Intestine Large	intestine
32	chr1:180356200-180357000	ZNF genes & repeats	Ovary	ovary
33	chr1:180356200-180357000	Strong transcription	A549	lung
34	chr1:180356400-180356600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr1:180356400-180356600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:180356400-180356600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
37	chr1:180356400-180356600	Weak transcription	Left Ventricle	heart
38	chr1:180356400-180356800	ZNF genes & repeats	Primary T cells from cord blood	blood
39	chr1:180356400-180356800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:180356400-180356800	ZNF genes & repeats	Fetal Intestine Small	intestine
41	chr1:180356400-180356800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
42	chr1:180356400-180357000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:180356400-180357000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr1:180356400-180357000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:180356400-180357000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:180356400-180357000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
47	chr1:180356400-180357000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:180356400-180357000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:180356400-180357000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:180356400-180357000	ZNF genes & repeats	Fetal Lung	lung

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