Variant report

Variant	rs74146684
Chromosome Location	chr10:90014070-90014071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620229..89621991-chr10:90012840..90014857,2	MCF-7	breast:
2	chr10:90008495..90010104-chr10:90013625..90015215,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17110418	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56060315	0.85[AMR][1000 genomes]
rs74146689	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74146690	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74146693	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74146697	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90005800-90017200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90011600-90016200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:90012200-90014200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:90012200-90016600	Enhancers	Psoas Muscle	Psoas
5	chr10:90012400-90015200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:90012400-90015800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:90012600-90014200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:90012800-90014200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:90012800-90014400	Enhancers	Right Atrium	heart
10	chr10:90013000-90014400	Enhancers	HSMM	muscle
11	chr10:90013000-90014600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:90013000-90015800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:90013000-90016000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:90013200-90014600	Enhancers	NHDF-Ad	bronchial
15	chr10:90013200-90015000	Enhancers	HMEC	breast
16	chr10:90013200-90015200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:90013200-90015800	Enhancers	NHLF	lung
18	chr10:90013400-90014200	Enhancers	Colon Smooth Muscle	Colon
19	chr10:90013400-90014400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:90013400-90014400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:90013400-90014400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:90013400-90014400	Flanking Active TSS	Hela-S3	cervix
23	chr10:90013400-90014400	Enhancers	HUVEC	blood vessel
24	chr10:90013400-90014600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:90013400-90014600	Enhancers	NHEK	skin
26	chr10:90013400-90014800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:90013400-90015600	Enhancers	Stomach Mucosa	stomach
28	chr10:90013400-90015800	Enhancers	Pancreas	Pancrea
29	chr10:90013600-90014400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:90013600-90014600	Enhancers	Osteobl	bone
31	chr10:90013600-90014800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:90013600-90014800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:90013800-90014200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:90013800-90014200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:90013800-90014200	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr10:90013800-90014200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr10:90013800-90014400	Flanking Active TSS	A549	lung
38	chr10:90013800-90014400	Enhancers	GM12878-XiMat	blood
39	chr10:90013800-90014800	Weak transcription	Esophagus	oesophagus
40	chr10:90014000-90014200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:90014000-90014400	Enhancers	Fetal Thymus	thymus
42	chr10:90014000-90014400	Flanking Active TSS	NH-A	brain
43	chr10:90014000-90014600	Enhancers	Dnd41	blood
44	chr10:90014000-90015600	Weak transcription	Fetal Muscle Trunk	muscle

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