Variant report

Variant	rs56060315
Chromosome Location	chr10:90046901-90046902
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs74146684	0.85[AMR][1000 genomes]
rs74146689	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74146690	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74146693	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74146697	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042200-90048400	Weak transcription	Pancreas	Pancrea
2	chr10:90042800-90048400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:90042800-90048600	Weak transcription	Thymus	Thymus
4	chr10:90042800-90051200	Weak transcription	HSMM	muscle
5	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
6	chr10:90043000-90048200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:90043000-90048400	Weak transcription	Fetal Thymus	thymus
8	chr10:90043000-90048400	Weak transcription	NHDF-Ad	bronchial
9	chr10:90043000-90048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:90043000-90048600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:90043000-90051200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:90043000-90051200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:90043200-90048000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:90043200-90048400	Weak transcription	Dnd41	blood
15	chr10:90043200-90049000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:90044200-90048200	Weak transcription	GM12878-XiMat	blood
17	chr10:90044400-90048400	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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