Variant report

Variant	rs74146693
Chromosome Location	chr10:90048975-90048976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620307..89622864-chr10:90048277..90050868,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17110418	0.83[EUR][1000 genomes]
rs56060315	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74146684	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74146689	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146690	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042800-90051200	Weak transcription	HSMM	muscle
2	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
3	chr10:90043000-90051200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:90043000-90051200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90043200-90049000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:90048000-90049000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:90048200-90049600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:90048200-90050600	Enhancers	GM12878-XiMat	blood
9	chr10:90048400-90049000	Enhancers	Dnd41	blood
10	chr10:90048400-90049200	Enhancers	Fetal Thymus	thymus
11	chr10:90048400-90049200	Enhancers	HMEC	breast
12	chr10:90048400-90049400	Enhancers	Primary B cells from cord blood	blood
13	chr10:90048400-90049400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:90048400-90049400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:90048400-90049400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:90048400-90049400	Enhancers	NHDF-Ad	bronchial
17	chr10:90048400-90049600	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:90048600-90049000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:90048600-90049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:90048600-90049200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr10:90048600-90049400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:90048600-90049400	Enhancers	Thymus	Thymus
23	chr10:90048600-90049600	Enhancers	HSMMtube	muscle
24	chr10:90048800-90051200	Weak transcription	Pancreas	Pancrea

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