Variant report

Variant	rs74146697
Chromosome Location	chr10:90051356-90051357
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17110418	0.83[EUR][1000 genomes]
rs56060315	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74146684	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74146689	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146690	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
2	chr10:90049000-90056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90049400-90053000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:90049400-90053000	Weak transcription	NHDF-Ad	bronchial
5	chr10:90049600-90051600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:90049600-90051600	Weak transcription	Osteobl	bone
7	chr10:90049600-90051800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:90049800-90053000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:90050400-90052600	Enhancers	Primary B cells from peripheral blood	blood
10	chr10:90050600-90051600	Weak transcription	GM12878-XiMat	blood
11	chr10:90050800-90053200	Enhancers	Dnd41	blood
12	chr10:90051000-90052600	Enhancers	Fetal Thymus	thymus
13	chr10:90051000-90052600	Enhancers	Thymus	Thymus
14	chr10:90051000-90053200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:90051200-90051800	Enhancers	Pancreas	Pancrea
16	chr10:90051200-90051800	Enhancers	HSMM	muscle
17	chr10:90051200-90052600	Enhancers	Primary B cells from cord blood	blood
18	chr10:90051200-90052600	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:90051200-90052600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:90051200-90052600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:90051200-90054000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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