Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1097517	0.81[EUR][1000 genomes]
rs483976	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs485845	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs496558	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs499183	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs502857	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs516228	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs535719	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs537364	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs539044	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs546131	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs546521	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs547504	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs550313	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs552171	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs552627	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs552868	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs553789	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs558967	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs572690	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs578002	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34847200-34858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:34852000-34858200	Weak transcription	HepG2	liver
3	chr11:34852600-34858400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34853200-34858400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:34855800-34858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:34856000-34858000	Weak transcription	Esophagus	oesophagus

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