Variant report

Variant	rs546131
Chromosome Location	chr11:34851760-34851761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34823587..34826482-chr11:34851054..34853222,2	K562	blood:
2	chr11:34842739..34845478-chr11:34850745..34855445,5	K562	blood:
3	chr11:34842739..34845478-chr11:34850745..34852708,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1097517	0.83[EUR][1000 genomes]
rs483976	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs485845	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs496558	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs499183	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs502857	0.87[ASN][1000 genomes]
rs516228	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs525202	0.88[ASN][1000 genomes]
rs535719	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs537364	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs539044	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs546521	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs547504	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs550313	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs552171	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs552627	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs552868	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs553789	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs558967	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs572690	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs578002	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs744841	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946699	0.85[ASN][1000 genomes]
rs7946980	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34847000-34852000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:34847200-34858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:34847400-34852200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34847600-34852000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:34847800-34851800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:34848200-34854400	Weak transcription	Esophagus	oesophagus
7	chr11:34851400-34852000	Enhancers	HepG2	liver
8	chr11:34851400-34852200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:34851400-34852200	Enhancers	Hela-S3	cervix
10	chr11:34851400-34853200	Enhancers	K562	blood
11	chr11:34851600-34852400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:34851600-34852400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:34851600-34852600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:34851600-34852600	Enhancers	Right Ventricle	heart
15	chr11:34851600-34852800	Enhancers	Fetal Heart	heart

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