Variant report

Variant	rs7946980
Chromosome Location	chr11:34820438-34820439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34820151..34822976-chr11:34824163..34828080,3	K562	blood:
2	chr11:34819205..34826551-chr11:34829823..34835499,8	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501136	0.91[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap]
rs10836314	0.93[AFR][1000 genomes]
rs11600239	0.81[EUR][1000 genomes]
rs11603751	0.81[EUR][1000 genomes]
rs12278295	0.86[CEU][hapmap]
rs12291580	0.90[CEU][hapmap]
rs2116086	0.94[AFR][1000 genomes]
rs2915186	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34136526	0.81[EUR][1000 genomes]
rs35712504	0.81[EUR][1000 genomes]
rs473848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs473885	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs483976	0.87[ASN][1000 genomes]
rs496558	0.99[ASN][1000 genomes]
rs498798	0.84[AMR][1000 genomes]
rs499183	0.88[ASN][1000 genomes]
rs502857	0.84[EUR][1000 genomes]
rs508062	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs512013	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs516228	0.88[ASN][1000 genomes]
rs523246	1.00[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs525202	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535719	0.87[ASN][1000 genomes]
rs537364	0.88[ASN][1000 genomes]
rs537873	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs539044	0.88[ASN][1000 genomes]
rs546131	0.88[ASN][1000 genomes]
rs546521	0.99[ASN][1000 genomes]
rs548967	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs552627	0.99[ASN][1000 genomes]
rs552868	0.95[ASN][1000 genomes]
rs553789	0.95[ASN][1000 genomes]
rs558967	0.95[ASN][1000 genomes]
rs561477	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs566798	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs568529	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs572690	0.95[ASN][1000 genomes]
rs578002	0.88[ASN][1000 genomes]
rs579926	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61881094	0.81[EUR][1000 genomes]
rs7130756	0.83[AFR][1000 genomes]
rs7932115	0.93[AFR][1000 genomes]
rs7946699	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs836950	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897214	chr11:34764251-34821948	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1049551	chr11:34811180-34833640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34815000-34821200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34815000-34833600	Weak transcription	HepG2	liver
3	chr11:34819400-34820600	Weak transcription	Stomach Mucosa	stomach
4	chr11:34819600-34821800	Enhancers	Liver	Liver
5	chr11:34819800-34827000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:34820200-34820800	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links