Variant report

Variant	rs508062
Chromosome Location	chr11:34843820-34843821
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34828810..34832933-chr11:34843194..34845330,4	K562	blood:
2	chr11:34842739..34845478-chr11:34850745..34855445,5	K562	blood:
3	chr11:34843450..34845842-chr11:34860291..34863263,2	MCF-7	breast:
4	chr11:34828027..34830310-chr11:34842836..34844990,2	K562	blood:
5	chr11:34842739..34845478-chr11:34850745..34852708,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10501136	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs1097517	0.89[ASN][1000 genomes]
rs11602870	0.82[EUR][1000 genomes]
rs11602886	0.80[EUR][1000 genomes]
rs11605381	0.81[EUR][1000 genomes]
rs12278295	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12291580	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs2915186	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2956073	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34026463	0.82[EUR][1000 genomes]
rs34878924	0.82[EUR][1000 genomes]
rs35833762	0.82[EUR][1000 genomes]
rs35953213	0.81[EUR][1000 genomes]
rs473848	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs473885	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs485845	0.90[ASN][1000 genomes]
rs490410	0.80[AFR][1000 genomes]
rs498798	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs502857	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs504186	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs512013	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523246	0.81[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525202	0.88[EUR][1000 genomes]
rs537873	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs547504	0.99[ASN][1000 genomes]
rs548967	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs550313	0.90[ASN][1000 genomes]
rs552171	0.90[ASN][1000 genomes]
rs561477	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs566798	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs568529	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571164	0.81[AFR][1000 genomes]
rs579926	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61881103	0.82[EUR][1000 genomes]
rs61881104	0.82[EUR][1000 genomes]
rs61881107	0.81[EUR][1000 genomes]
rs7131074	0.82[EUR][1000 genomes]
rs7946699	0.82[EUR][1000 genomes]
rs7946980	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs836950	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34839400-34844000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:34840600-34844400	Weak transcription	HepG2	liver
4	chr11:34843600-34845600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:34843600-34845600	Enhancers	Liver	Liver
6	chr11:34843800-34845800	Enhancers	Adipose Nuclei	Adipose

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