Variant report

Variant	rs2915186
Chromosome Location	chr11:34851183-34851184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34823587..34826482-chr11:34851054..34853222,2	K562	blood:
2	chr11:34842739..34845478-chr11:34850745..34855445,5	K562	blood:
3	chr11:34842739..34845478-chr11:34850745..34852708,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10501136	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10836315	0.81[EUR][1000 genomes]
rs1097517	0.91[ASN][1000 genomes]
rs11605381	0.81[EUR][1000 genomes]
rs12272777	0.81[EUR][1000 genomes]
rs12278295	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12291580	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12293044	0.81[EUR][1000 genomes]
rs12803664	0.81[EUR][1000 genomes]
rs12808574	0.81[EUR][1000 genomes]
rs2956073	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34191151	0.81[EUR][1000 genomes]
rs35953213	0.81[EUR][1000 genomes]
rs473848	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473885	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485845	0.91[ASN][1000 genomes]
rs498798	0.89[ASN][1000 genomes]
rs502857	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs508062	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs512013	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs523246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs525202	0.87[EUR][1000 genomes]
rs537873	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs547504	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs548967	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550313	0.91[ASN][1000 genomes]
rs552171	0.91[ASN][1000 genomes]
rs561477	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566798	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568529	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs579926	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881107	0.81[EUR][1000 genomes]
rs7946699	0.80[EUR][1000 genomes]
rs7946980	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs836950	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34847000-34852000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:34847200-34858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:34847400-34852200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34847600-34851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:34847600-34851600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:34847600-34852000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:34847800-34851800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:34848200-34854400	Weak transcription	Esophagus	oesophagus
9	chr11:34848800-34851400	Weak transcription	K562	blood
10	chr11:34848800-34851600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:34849400-34851400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:34849600-34851400	Weak transcription	HepG2	liver

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