Variant report

Variant	rs537873
Chromosome Location	chr11:34835121-34835122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34828929..34832909-chr11:34833620..34837580,5	K562	blood:
2	chr11:34819205..34826551-chr11:34829823..34835499,8	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1039841	0.82[EUR][1000 genomes]
rs1097517	0.98[ASN][1000 genomes]
rs11603640	0.82[EUR][1000 genomes]
rs12791769	0.82[EUR][1000 genomes]
rs12793173	0.82[EUR][1000 genomes]
rs12794294	0.80[EUR][1000 genomes]
rs1594425	0.82[EUR][1000 genomes]
rs1594426	0.82[EUR][1000 genomes]
rs2915186	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2956073	0.82[AMR][1000 genomes]
rs35264793	0.82[EUR][1000 genomes]
rs35617374	0.82[EUR][1000 genomes]
rs473848	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs473885	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs484717	0.85[AFR][1000 genomes]
rs485845	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs486710	0.85[AFR][1000 genomes]
rs498798	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs502857	0.87[EUR][1000 genomes]
rs508062	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs512013	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs522585	0.87[AFR][1000 genomes]
rs523246	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs525202	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs547504	0.90[ASN][1000 genomes]
rs548967	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs550313	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs552171	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs561477	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs566798	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs568529	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs579926	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs704749	0.85[AFR][1000 genomes]
rs7106579	0.82[EUR][1000 genomes]
rs7946699	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7946980	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs836950	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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