Variant report

Variant	rs74880786
Chromosome Location	chr4:10118772-10118773
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:442)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:442 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr4:10118612-10118936	A549	lung:	n/a	n/a
2	TEAD4	chr4:10118201-10118921	ECC-1	luminal epithelium:	n/a	n/a
3	HEY1	chr4:10118608-10119947	HepG2	liver:	n/a	n/a
4	GABPA	chr4:10117840-10119048	K562	blood:	n/a	chr4:10118580-10118594
5	TAF1	chr4:10118619-10118879	HepG2	liver:	n/a	n/a
6	JUND	chr4:10118295-10119869	K562	blood:	n/a	chr4:10119554-10119563 chr4:10119145-10119154
7	POLR2A	chr4:10118617-10119031	HCT-116	colon:	n/a	n/a
8	E2F4	chr4:10118274-10119337	MCF10A-Er-Src	breast:	n/a	chr4:10119212-10119224
9	MAX	chr4:10118210-10119519	GM12878	blood:	n/a	chr4:10119115-10119124
10	MAX	chr4:10118098-10119234	A549	lung:	n/a	chr4:10119115-10119124
11	ELF1	chr4:10117271-10119085	HCT-116	colon:	n/a	chr4:10118496-10118505 chr4:10118494-10118505 chr4:10118649-10118658 chr4:10118494-10118505 chr4:10118648-10118659 chr4:10118495-10118504
12	POLR2A	chr4:10117184-10119768	GM12878	blood:	n/a	n/a
13	MAZ	chr4:10117889-10119091	Hela-S3	cervix:	n/a	n/a
14	MAFK	chr4:10118731-10118890	HepG2	liver:	n/a	n/a
15	CHD1	chr4:10117557-10119893	H1-hESC	embryonic stem cell:	n/a	chr4:10118642-10118652 chr4:10118518-10118528
16	GABPA	chr4:10118510-10118859	Hela-S3	cervix:	n/a	chr4:10118580-10118594
17	EGR1	chr4:10118171-10118936	H1-hESC	embryonic stem cell:	n/a	chr4:10118650-10118659 chr4:10118418-10118432
18	GTF2F1	chr4:10118333-10119159	K562	blood:	n/a	n/a
19	TAF7	chr4:10117413-10119643	H1-hESC	embryonic stem cell:	n/a	n/a
20	ZBTB7A	chr4:10118627-10119007	K562	blood:	n/a	chr4:10118792-10118806
21	TCF12	chr4:10118116-10119130	ECC-1	luminal epithelium:	n/a	chr4:10118767-10118777
22	POLR2A	chr4:10107812-10120993	GM18505	blood:	n/a	n/a
23	POLR2A	chr4:10117528-10118927	A549	lung:	n/a	n/a
24	FOXM1	chr4:10118166-10119781	GM12878	blood:	n/a	n/a
25	MAZ	chr4:10118229-10118946	HepG2	liver:	n/a	n/a
26	ARID3A	chr4:10118681-10118881	HepG2	liver:	n/a	n/a
27	MXI1	chr4:10116836-10118976	HepG2	liver:	n/a	n/a
28	POLR2A	chr4:10117435-10120202	MCF10A-Er-Src	breast:	n/a	n/a
29	JUND	chr4:10118627-10118806	H1-hESC	embryonic stem cell:	n/a	n/a
30	SMARCB1	chr4:10117308-10119876	Hela-S3	cervix:	n/a	n/a
31	TAF1	chr4:10118606-10118912	GM12891	blood:	n/a	n/a
32	ELK1	chr4:10118246-10119013	Hela-S3	cervix:	n/a	n/a
33	MYC	chr4:10117407-10119673	K562	blood:	n/a	chr4:10119115-10119124
34	PBX3	chr4:10118617-10118832	A549	lung:	n/a	n/a
35	POLR2A	chr4:10116537-10120533	GM12892	blood:	n/a	n/a
36	POLR2A	chr4:10118481-10118968	SK-N-MC	brain:	n/a	n/a
37	MXI1	chr4:10116874-10119711	SK-N-SH	brain:	n/a	n/a
38	CREB1	chr4:10118441-10118969	ECC-1	luminal epithelium:	n/a	n/a
39	MAX	chr4:10118079-10119070	HepG2	liver:	n/a	n/a
40	NFIC	chr4:10118610-10119817	GM12878	blood:	n/a	n/a
41	JUN	chr4:10117961-10119359	K562	blood:	n/a	chr4:10119145-10119154
42	PAX5	chr4:10118629-10118833	GM12878	blood:	n/a	n/a
43	EP300	chr4:10118106-10119052	SK-N-SH	brain:	n/a	chr4:10118651-10118658 chr4:10118693-10118709
44	MAFK	chr4:10118360-10119084	K562	blood:	n/a	n/a
45	MAX	chr4:10118283-10119086	SK-N-SH	brain:	n/a	n/a
46	GABPA	chr4:10118258-10118879	K562	blood:	n/a	chr4:10118580-10118594
47	TAF1	chr4:10118509-10118935	SK-N-SH	brain:	n/a	n/a
48	POU2F2	chr4:10118622-10119139	GM12891	blood:	n/a	n/a
49	CREB1	chr4:10118316-10118996	A549	lung:	n/a	n/a
50	TCF7L2	chr4:10117817-10119064	HCT-116	colon:	n/a	n/a

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10114078..10122203-chr4:10455501..10461954,12	K562	blood:
2	chr17:62971116..62971769-chr4:10117977..10118825,2	HCT-116	colon:
3	chr12:46766102..46766947-chr4:10118442..10119033,2	NB4	blood:
4	chr4:10079908..10083086-chr4:10118111..10120743,3	MCF-7	breast:
5	chr11:130182992..130183574-chr4:10118623..10119357,2	MCF-7	breast:
6	chr1:78469701..78470650-chr4:10118290..10119096,2	NB4	blood:
7	chr4:10117885..10120046-chr4:15002077..15005679,3	K562	blood:
8	chr19:10224335..10225204-chr4:10118675..10119254,2	NB4	blood:
9	chr4:10118096..10120134-chr4:120132938..120134985,2	MCF-7	breast:
10	chr4:10118162..10120785-chr4:10200742..10203933,4	K562	blood:
11	chr13:21714262..21714869-chr4:10118063..10118890,2	HCT-116	colon:
12	chr4:10094579..10097244-chr4:10117506..10119251,2	MCF-7	breast:
13	chr4:10118476..10119161-chr6:26250194..26250980,2	NB4	blood:
14	chr4:10117355..10119664-chr4:10257217..10260454,4	K562	blood:
15	chr1:174968127..174968990-chr4:10118350..10119217,2	Hela-S3	cervix:
16	chr4:10118696..10122262-chr4:10407294..10411909,5	K562	blood:
17	chr4:10118457..10122021-chr9:33165887..33167387,4	K562	blood:
18	chr4:10117400..10119957-chr9:33165887..33167387,2	K562	blood:
19	chr4:10117259..10123841-chr4:10401893..10417202,19	K562	blood:
20	chr3:9773232..9773914-chr4:10118574..10119104,2	Hela-S3	cervix:
21	chr17:47269694..47270307-chr4:10118653..10119466,2	Hela-S3	cervix:
22	chr11:65628087..65628682-chr4:10118398..10119077,2	NB4	blood:
23	chr1:11969419..11970303-chr4:10118380..10119027,2	HCT-116	colon:
24	chr4:10118335..10120046-chr4:15002866..15005679,2	K562	blood:
25	chr4:10117656..10120785-chr4:10200069..10203011,5	K562	blood:
26	chr4:10117842..10119536-chr4:10257217..10259311,2	K562	blood:
27	chr4:10091716..10096918-chr4:10117039..10120240,5	MCF-7	breast:
28	chr2:95787195..95787845-chr4:10118352..10119171,2	HCT-116	colon:
29	chr4:10117460..10124392-chr4:10456675..10465032,17	K562	blood:
30	chr1:45187046..45187955-chr4:10118506..10119135,2	HCT-116	colon:
31	chr4:10118597..10121491-chr4:10308024..10311461,4	K562	blood:
32	chr4:10109894..10126876-chr4:10164648..10190106,79	K562	blood:
33	chr15:65596761..65597431-chr4:10118051..10119234,3	NB4	blood:
34	chr4:10117300..10124855-chr4:10138380..10145377,13	MCF-7	breast:
35	chr4:10116325..10123199-chr4:10169149..10177855,21	K562	blood:
36	chr4:10117020..10119192-chr4:10169153..10171156,2	MCF-7	breast:
37	chr4:10118323..10118922-chr9:88896214..88897112,2	Hela-S3	cervix:
38	chr4:10097932..10101732-chr4:10116626..10120469,5	MCF-7	breast:

No data

Variant related genes	Relation type
WDR1	TF binding region
RNA5SP155	TF binding region
ENSG00000145390	Chromatin interaction
ENSG00000178163	Chromatin interaction
ENSG00000150459	Chromatin interaction
ENSG00000134294	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000248777	Chromatin interaction
ENSG00000156983	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000273338	Chromatin interaction
ENSG00000251296	Chromatin interaction
ENSG00000144029	Chromatin interaction
ENSG00000086062	Chromatin interaction
ENSG00000162616	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000264931	Chromatin interaction
ENSG00000233554	Chromatin interaction
ENSG00000137449	Chromatin interaction
ENSG00000071127	Chromatin interaction
ENSG00000116161	Chromatin interaction
ENSG00000201801	Chromatin interaction
ENSG00000135070	Chromatin interaction
ENSG00000250040	Chromatin interaction
ENSG00000250393	Chromatin interaction
ENSG00000250613	Chromatin interaction
ENSG00000214174	Chromatin interaction
ENSG00000247624	Chromatin interaction
ENSG00000178636	Chromatin interaction
ENSG00000199377	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
5	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
7	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
15	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
16	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
18	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
19	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
20	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
21	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
22	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
23	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
24	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
25	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
26	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
27	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
28	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
29	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
30	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
31	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
32	nsv537031	chr4:10040713-10262258	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
33	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
34	nsv428438	chr4:10058226-10273779	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
35	nsv537032	chr4:10069805-10262258	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
36	nsv537033	chr4:10069805-10297561	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
37	nsv524687	chr4:10080462-10159103	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
38	nsv1003286	chr4:10082156-10230606	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
39	esv16807	chr4:10099819-10234566	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
40	nsv537034	chr4:10103058-10262258	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
41	nsv537035	chr4:10103058-10297561	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
42	esv3354977	chr4:10117079-10119627	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	35 gene(s)	inside rSNPs	diseases
43	esv3526537	chr4:10117204-10120252	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
44	esv3526538	chr4:10117204-10120252	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
45	nsv10451	chr4:10118704-10120232	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10116800-10118800	Active TSS	NH-A	brain
2	chr4:10116800-10119200	Active TSS	Aorta	Aorta
3	chr4:10117000-10118800	Active TSS	HSMM	muscle
4	chr4:10117000-10119000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr4:10117000-10119000	Active TSS	HSMMtube	muscle
6	chr4:10117000-10119200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:10117000-10119200	Active TSS	Right Atrium	heart
8	chr4:10117000-10119200	Active TSS	Small Intestine	intestine
9	chr4:10117000-10119400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr4:10117200-10119000	Active TSS	Psoas Muscle	Psoas
11	chr4:10117200-10119000	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr4:10117200-10119200	Active TSS	Ovary	ovary
13	chr4:10117200-10119200	Active TSS	A549	lung
14	chr4:10117200-10119800	Active TSS	H9 Cell Line	embryonic stem cell
15	chr4:10117400-10118800	Active TSS	Primary T cells from cord blood	blood
16	chr4:10117400-10118800	Active TSS	Rectal Smooth Muscle	rectum
17	chr4:10117400-10118800	Active TSS	GM12878-XiMat	blood
18	chr4:10117400-10118800	Active TSS	HUVEC	blood vessel
19	chr4:10117400-10118800	Active TSS	NHDF-Ad	bronchial
20	chr4:10117400-10119000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:10117400-10119000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:10117400-10119000	Active TSS	Spleen	Spleen
23	chr4:10117400-10119200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:10117400-10119200	Active TSS	Colonic Mucosa	Colon
25	chr4:10117400-10119200	Active TSS	Esophagus	oesophagus
26	chr4:10117400-10119200	Active TSS	Gastric	stomach
27	chr4:10117400-10119200	Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr4:10117400-10119400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:10117400-10119400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:10117400-10119400	Active TSS	Fetal Kidney	kidney
31	chr4:10117400-10120000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:10117600-10118800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:10117600-10118800	Active TSS	Primary T cells fromperipheralblood	blood
34	chr4:10117600-10118800	Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr4:10117600-10118800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:10117600-10118800	Active TSS	Duodenum Mucosa	Duodenum
37	chr4:10117600-10118800	Active TSS	HepG2	liver
38	chr4:10117600-10118800	Active TSS	HMEC	breast
39	chr4:10117600-10118800	Active TSS	NHEK	skin
40	chr4:10117600-10119000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:10117600-10119000	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr4:10117600-10119000	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr4:10117600-10119000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:10117600-10119000	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr4:10117600-10119000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr4:10117600-10119000	Active TSS	Brain Angular Gyrus	brain
47	chr4:10117600-10119000	Active TSS	Brain Anterior Caudate	brain
48	chr4:10117600-10119000	Active TSS	Colon Smooth Muscle	Colon
49	chr4:10117600-10119000	Active TSS	Fetal Brain Female	brain
50	chr4:10117600-10119000	Active TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links