Variant report

Variant	rs7521863
Chromosome Location	chr1:194008455-194008456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10157295	0.86[ASN][1000 genomes]
rs10429908	0.90[ASN][1000 genomes]
rs10801283	0.89[EUR][1000 genomes]
rs10921484	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10921488	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10921489	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10921492	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12028846	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12073039	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12750617	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12755187	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1323088	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1323089	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13374626	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1442422	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1830680	0.91[EUR][1000 genomes]
rs4657898	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4657899	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4657901	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs597957	0.90[EUR][1000 genomes]
rs677459	0.89[EUR][1000 genomes]
rs9943286	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194007600-194008800	Enhancers	Primary T cells from cord blood	blood
2	chr1:194007800-194010200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:194007800-194010600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:194008000-194008800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:194008000-194009400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:194008000-194010200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:194008200-194008800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:194008200-194010200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:194008200-194010200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:194008200-194010600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:194008400-194010000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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