The 2.0 version of rSNPBase

Variant report

Variant rs7552899
Chromosome Location chr1:212974004-212974005
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212965800-212992600 Weak transcription Lung lung
2 chr1:212966000-212974800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:212966000-212981200 Weak transcription Esophagus oesophagus
4 chr1:212966000-212983000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:212966000-212997400 Weak transcription Aorta Aorta
6 chr1:212966200-212975600 Weak transcription HMEC breast
7 chr1:212966200-212979800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:212966400-212977400 Weak transcription Hela-S3 cervix
9 chr1:212966400-212984000 Weak transcription Rectal Smooth Muscle rectum
10 chr1:212966400-212985600 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:212966400-212988200 Weak transcription Fetal Heart heart
12 chr1:212966400-212989600 Weak transcription Fetal Brain Male brain
13 chr1:212966400-212990200 Weak transcription Right Ventricle heart
14 chr1:212966800-212977600 Weak transcription Brain Germinal Matrix brain
15 chr1:212966800-212989600 Weak transcription Psoas Muscle Psoas
16 chr1:212967000-212979000 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr1:212967000-212984400 Weak transcription Spleen Spleen
18 chr1:212967200-212975400 Weak transcription HSMM muscle
19 chr1:212967200-212984000 Weak transcription NHDF-Ad bronchial
20 chr1:212967200-212988400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:212967200-212989000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:212967200-212989600 Weak transcription NHLF lung
23 chr1:212968000-212980000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr1:212968000-212987400 Weak transcription Fetal Intestine Large intestine
25 chr1:212968400-212974400 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:212968400-212988000 Weak transcription Stomach Mucosa stomach
27 chr1:212968600-212980200 Weak transcription HUVEC blood vessel
28 chr1:212968800-212974600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:212969000-212975400 Strong transcription HUES48 Cell Line embryonic stem cell
30 chr1:212969000-212976200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:212969000-212976400 Strong transcription Liver Liver
32 chr1:212969000-212980000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:212969000-212980000 Strong transcription Dnd41 blood
34 chr1:212969000-212982600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:212969000-212982600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
36 chr1:212969000-212983000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:212969200-212976200 Strong transcription Fetal Thymus thymus
38 chr1:212969400-212978600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:212969600-212989000 Weak transcription HepG2 liver
40 chr1:212969600-212993000 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:212969800-212975000 Strong transcription HUES6 Cell Line embryonic stem cell
42 chr1:212970000-212975600 Strong transcription Brain Angular Gyrus brain
43 chr1:212970000-212976200 Strong transcription Primary hematopoietic stem cells blood
44 chr1:212970000-212976200 Strong transcription Adipose Nuclei Adipose
45 chr1:212970200-212976200 Strong transcription Primary T helper cells fromperipheralblood blood
46 chr1:212970400-212974200 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr1:212970400-212975800 Strong transcription Primary T killer naive cells fromperipheralblood blood
48 chr1:212970600-212977600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:212970600-212977800 Weak transcription Colon Smooth Muscle Colon
50 chr1:212970600-212982800 Weak transcription Ovary ovary

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Last update: Aug 31, 2015