The 2.0 version of rSNPBase

Variant report

Variant rs28872849
Chromosome Location chr1:212918924-212918925
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212895200-212922800 Weak transcription Left Ventricle heart
2 chr1:212895400-212923200 Weak transcription Brain Cingulate Gyrus brain
3 chr1:212895400-212923400 Weak transcription Fetal Muscle Leg muscle
4 chr1:212895400-212923400 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:212895400-212926400 Weak transcription Esophagus oesophagus
6 chr1:212895400-212964600 Weak transcription Pancreas Pancrea
7 chr1:212895600-212923000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:212895600-212923400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:212895600-212964600 Weak transcription Gastric stomach
10 chr1:212895800-212925600 Weak transcription Small Intestine intestine
11 chr1:212895800-212926200 Weak transcription Hela-S3 cervix
12 chr1:212898600-212923200 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:212898800-212934000 Weak transcription Fetal Muscle Trunk muscle
14 chr1:212899800-212926400 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr1:212900400-212923200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr1:212900400-212927600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr1:212900400-212932600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:212900400-212936200 Weak transcription Aorta Aorta
19 chr1:212901400-212954000 Weak transcription NH-A brain
20 chr1:212901600-212923000 Weak transcription HSMM muscle
21 chr1:212902200-212941800 Weak transcription Fetal Kidney kidney
22 chr1:212902600-212943600 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:212903000-212923400 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:212903200-212923400 Weak transcription Duodenum Mucosa Duodenum
25 chr1:212903600-212926400 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:212904200-212923200 Weak transcription Adipose Nuclei Adipose
27 chr1:212904800-212926200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr1:212905200-212923200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:212905200-212923400 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr1:212905600-212923400 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr1:212906200-212923400 Weak transcription HMEC breast
32 chr1:212906800-212923400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr1:212908000-212933200 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr1:212909400-212923200 Weak transcription Primary B cells from peripheral blood blood
35 chr1:212911000-212922800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr1:212911600-212923000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:212912000-212923200 Weak transcription Liver Liver
38 chr1:212912000-212935800 Weak transcription K562 blood
39 chr1:212912200-212925800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr1:212913000-212923000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:212913600-212923200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr1:212913600-212923400 Weak transcription NHEK skin
43 chr1:212914800-212923400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr1:212915000-212925800 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr1:212915200-212920400 Weak transcription Monocytes-CD14+_RO01746 blood
46 chr1:212915200-212923400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:212915400-212923000 Weak transcription Primary monocytes fromperipheralblood blood
48 chr1:212915400-212923400 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr1:212915400-212923400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr1:212915400-212923400 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015