Variant report
Variant | rs12119531 |
---|---|
Chromosome Location | chr1:212888426-212888427 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:212882006..212883516-chr1:212887747..212889401,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10127512 | 0.86[ASN][1000 genomes] |
rs10127703 | 0.86[ASN][1000 genomes] |
rs10127756 | 0.86[ASN][1000 genomes] |
rs1046083 | 0.94[ASN][1000 genomes] |
rs10465693 | 0.83[ASN][1000 genomes] |
rs10863988 | 0.88[ASN][1000 genomes] |
rs10863989 | 1.00[ASN][1000 genomes] |
rs10863997 | 0.86[ASN][1000 genomes] |
rs11120001 | 1.00[ASN][1000 genomes] |
rs11120006 | 0.83[ASN][1000 genomes] |
rs11120007 | 0.94[ASN][1000 genomes] |
rs11120010 | 0.81[ASN][1000 genomes] |
rs11120014 | 0.81[ASN][1000 genomes] |
rs11120017 | 0.89[ASN][1000 genomes] |
rs11556187 | 0.86[ASN][1000 genomes] |
rs11800642 | 0.94[ASN][1000 genomes] |
rs11806535 | 0.91[ASN][1000 genomes] |
rs11809232 | 0.86[ASN][1000 genomes] |
rs11809382 | 0.87[ASN][1000 genomes] |
rs11810895 | 1.00[ASN][1000 genomes] |
rs11811017 | 0.91[ASN][1000 genomes] |
rs12125867 | 0.83[ASN][1000 genomes] |
rs12128903 | 0.94[ASN][1000 genomes] |
rs12129465 | 0.81[ASN][1000 genomes] |
rs12133174 | 0.81[ASN][1000 genomes] |
rs12137768 | 0.86[ASN][1000 genomes] |
rs12139618 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12402370 | 0.86[ASN][1000 genomes] |
rs12404618 | 0.81[ASN][1000 genomes] |
rs12404885 | 0.81[ASN][1000 genomes] |
rs12729663 | 0.97[ASN][1000 genomes] |
rs13376317 | 0.87[ASN][1000 genomes] |
rs13376383 | 0.87[ASN][1000 genomes] |
rs13376390 | 0.87[ASN][1000 genomes] |
rs1507357 | 0.91[ASN][1000 genomes] |
rs1507358 | 0.81[ASN][1000 genomes] |
rs1857971 | 0.81[ASN][1000 genomes] |
rs2135823 | 0.83[ASN][1000 genomes] |
rs2174780 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2174781 | 0.83[ASN][1000 genomes] |
rs2271148 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2358899 | 0.91[ASN][1000 genomes] |
rs28872849 | 0.83[ASN][1000 genomes] |
rs34110137 | 0.86[ASN][1000 genomes] |
rs3738803 | 0.87[ASN][1000 genomes] |
rs55840547 | 0.89[ASN][1000 genomes] |
rs56088044 | 0.87[ASN][1000 genomes] |
rs56243109 | 0.87[ASN][1000 genomes] |
rs57449384 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs59231663 | 0.94[ASN][1000 genomes] |
rs60308869 | 0.94[ASN][1000 genomes] |
rs6540760 | 0.94[ASN][1000 genomes] |
rs6540762 | 0.81[ASN][1000 genomes] |
rs6662981 | 1.00[ASN][1000 genomes] |
rs6664049 | 0.83[ASN][1000 genomes] |
rs6665365 | 0.88[ASN][1000 genomes] |
rs6670648 | 0.86[ASN][1000 genomes] |
rs6671866 | 0.86[ASN][1000 genomes] |
rs6681171 | 1.00[ASN][1000 genomes] |
rs6687672 | 0.86[ASN][1000 genomes] |
rs6688238 | 0.86[ASN][1000 genomes] |
rs6694448 | 0.94[ASN][1000 genomes] |
rs6700204 | 0.83[ASN][1000 genomes] |
rs6702101 | 0.83[ASN][1000 genomes] |
rs73081830 | 0.83[ASN][1000 genomes] |
rs73081853 | 0.91[ASN][1000 genomes] |
rs73081902 | 0.86[ASN][1000 genomes] |
rs73083707 | 0.86[ASN][1000 genomes] |
rs73083727 | 0.87[ASN][1000 genomes] |
rs73083731 | 0.87[ASN][1000 genomes] |
rs73083743 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs73083749 | 0.86[ASN][1000 genomes] |
rs7516312 | 0.86[ASN][1000 genomes] |
rs7525518 | 1.00[ASN][1000 genomes] |
rs7527216 | 0.94[ASN][1000 genomes] |
rs7536629 | 1.00[ASN][1000 genomes] |
rs7537598 | 0.83[ASN][1000 genomes] |
rs7538755 | 0.87[ASN][1000 genomes] |
rs7546462 | 1.00[ASN][1000 genomes] |
rs7546564 | 0.91[ASN][1000 genomes] |
rs7546754 | 0.94[ASN][1000 genomes] |
rs7550288 | 0.83[ASN][1000 genomes] |
rs7552880 | 0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1013110 | chr1:212555764-212948092 | Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 81 gene(s) | inside rSNPs | diseases |
2 | nsv535287 | chr1:212555764-212948092 | Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 81 gene(s) | inside rSNPs | diseases |
3 | nsv549148 | chr1:212876902-212962207 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:212886400-212891800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr1:212886400-212894400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
3 | chr1:212886600-212894400 | Weak transcription | Osteobl | bone |