The 2.0 version of rSNPBase

Variant report

Variant rs56088044
Chromosome Location chr1:212954231-212954232
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212895400-212964600 Weak transcription Pancreas Pancrea
2 chr1:212895600-212964600 Weak transcription Gastric stomach
3 chr1:212923600-212956200 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:212923600-212963800 Weak transcription Brain Angular Gyrus brain
5 chr1:212923600-212964400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:212923800-212957600 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:212923800-212964200 Weak transcription HMEC breast
8 chr1:212926600-212963400 Weak transcription Rectal Smooth Muscle rectum
9 chr1:212927400-212963400 Weak transcription Small Intestine intestine
10 chr1:212927400-212964200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:212928400-212956200 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:212936600-212954800 Weak transcription Left Ventricle heart
13 chr1:212936600-212956000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:212936600-212956200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr1:212936600-212956200 Weak transcription Thymus Thymus
16 chr1:212936600-212959800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:212936600-212960200 Weak transcription Lung lung
18 chr1:212936600-212964400 Weak transcription Esophagus oesophagus
19 chr1:212939400-212956200 Weak transcription Fetal Stomach stomach
20 chr1:212941200-212964200 Weak transcription Right Ventricle heart
21 chr1:212942400-212964200 Weak transcription Aorta Aorta
22 chr1:212942600-212964400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:212942800-212956400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:212942800-212964200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:212943200-212956200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:212943200-212956200 Weak transcription Stomach Smooth Muscle stomach
27 chr1:212943200-212964200 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:212943600-212957800 Weak transcription Brain Anterior Caudate brain
29 chr1:212943800-212954800 Weak transcription Colon Smooth Muscle Colon
30 chr1:212943800-212955400 Weak transcription Fetal Muscle Trunk muscle
31 chr1:212944000-212954600 Weak transcription Brain Hippocampus Middle brain
32 chr1:212944000-212956800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:212944000-212958000 Weak transcription Brain Substantia Nigra brain
34 chr1:212944200-212956000 Weak transcription Primary T cells from cord blood blood
35 chr1:212944200-212956200 Weak transcription Psoas Muscle Psoas
36 chr1:212944200-212956800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:212944200-212964400 Weak transcription Fetal Heart heart
38 chr1:212944400-212954600 Weak transcription Adipose Nuclei Adipose
39 chr1:212944400-212955200 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr1:212944400-212956200 Weak transcription Fetal Muscle Leg muscle
41 chr1:212945600-212954400 Weak transcription Fetal Kidney kidney
42 chr1:212945600-212956000 Weak transcription NHLF lung
43 chr1:212945800-212955800 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:212945800-212959800 Weak transcription Ovary ovary
45 chr1:212946000-212954600 Weak transcription ES-WA7 Cell Line embryonic stem cell
46 chr1:212947800-212956000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:212948200-212954800 Weak transcription Duodenum Mucosa Duodenum
48 chr1:212948200-212956000 Weak transcription NHDF-Ad bronchial
49 chr1:212948400-212956000 Weak transcription Muscle Satellite Cultured Cells --
50 chr1:212948400-212960000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015