The 2.0 version of rSNPBase

Variant report

Variant rs7552880
Chromosome Location chr1:212963260-212963261
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212895400-212964600 Weak transcription Pancreas Pancrea
2 chr1:212895600-212964600 Weak transcription Gastric stomach
3 chr1:212923600-212963800 Weak transcription Brain Angular Gyrus brain
4 chr1:212923600-212964400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:212923800-212964200 Weak transcription HMEC breast
6 chr1:212926600-212963400 Weak transcription Rectal Smooth Muscle rectum
7 chr1:212927400-212963400 Weak transcription Small Intestine intestine
8 chr1:212927400-212964200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr1:212936600-212964400 Weak transcription Esophagus oesophagus
10 chr1:212941200-212964200 Weak transcription Right Ventricle heart
11 chr1:212942400-212964200 Weak transcription Aorta Aorta
12 chr1:212942600-212964400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:212942800-212964200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:212943200-212964200 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:212944200-212964400 Weak transcription Fetal Heart heart
16 chr1:212950400-212964200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr1:212951800-212964400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr1:212952600-212963600 Weak transcription Colonic Mucosa Colon
19 chr1:212953000-212964400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:212953200-212964400 Weak transcription Placenta Amnion Placenta Amnion
21 chr1:212954400-212964400 Weak transcription Spleen Spleen
22 chr1:212955000-212964200 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr1:212955600-212964200 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr1:212955800-212964400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:212956400-212964200 Weak transcription NHLF lung
26 chr1:212956600-212963800 Weak transcription NHDF-Ad bronchial
27 chr1:212956600-212964200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr1:212956600-212964200 Weak transcription NH-A brain
29 chr1:212956600-212964200 Weak transcription Osteobl bone
30 chr1:212956800-212963600 Weak transcription A549 lung
31 chr1:212956800-212964200 Weak transcription Psoas Muscle Psoas
32 chr1:212957200-212963800 Weak transcription HUVEC blood vessel
33 chr1:212957200-212964200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:212957800-212963800 Weak transcription Colon Smooth Muscle Colon
35 chr1:212957800-212964200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:212958200-212963600 Weak transcription Fetal Brain Male brain
37 chr1:212958400-212963600 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:212959000-212963600 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr1:212959000-212963800 Weak transcription Brain Substantia Nigra brain
40 chr1:212959200-212963800 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr1:212959200-212964200 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr1:212959400-212963800 Weak transcription Duodenum Mucosa Duodenum
43 chr1:212959600-212964200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:212959800-212963600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr1:212960200-212963800 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:212960200-212963800 Weak transcription HSMM muscle
47 chr1:212960400-212963600 Weak transcription Fetal Stomach stomach
48 chr1:212960400-212963800 Weak transcription Muscle Satellite Cultured Cells --
49 chr1:212960400-212963800 Weak transcription Stomach Smooth Muscle stomach
50 chr1:212960400-212964200 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015