Variant report

Variant	rs7581364
Chromosome Location	chr2:178186742-178186743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178128121..178130128-chr2:178186184..178188372,2	MCF-7	breast:
2	chr2:178129485..178131219-chr2:178186686..178189527,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTC30B-1	chr2:178186335-178186965	ENSG00000213963.2

Variant related genes	Relation type
ENSG00000222043	Chromatin interaction
ENSG00000116044	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10175252	0.82[EUR][1000 genomes]
rs10175660	0.82[EUR][1000 genomes]
rs10187221	1.00[EUR][1000 genomes]
rs10187323	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10198518	0.82[EUR][1000 genomes]
rs10207495	0.82[EUR][1000 genomes]
rs10930783	0.82[EUR][1000 genomes]
rs12104688	0.92[AFR][1000 genomes]
rs13392350	0.82[EUR][1000 genomes]
rs13394038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13426818	0.82[EUR][1000 genomes]
rs13429924	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1453374	0.82[EUR][1000 genomes]
rs1453375	0.82[EUR][1000 genomes]
rs16865163	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55848656	0.82[EUR][1000 genomes]
rs56174568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56181372	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56806189	0.82[EUR][1000 genomes]
rs58583364	0.82[EUR][1000 genomes]
rs59108338	0.90[EUR][1000 genomes]
rs59207362	0.91[AFR][1000 genomes]
rs59549243	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6720934	0.82[EUR][1000 genomes]
rs6720970	0.82[EUR][1000 genomes]
rs6724177	0.82[EUR][1000 genomes]
rs6735504	0.82[EUR][1000 genomes]
rs6744247	0.82[EUR][1000 genomes]
rs6746113	0.82[EUR][1000 genomes]
rs73035188	0.82[EUR][1000 genomes]
rs73035190	0.82[EUR][1000 genomes]
rs73035193	0.82[EUR][1000 genomes]
rs73039071	0.82[EUR][1000 genomes]
rs73039075	0.82[EUR][1000 genomes]
rs73979713	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979718	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979720	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73979722	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73979728	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7566319	0.82[EUR][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178147800-178187000	Weak transcription	HSMM	muscle
2	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:178160800-178196200	Weak transcription	Ovary	ovary
5	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
6	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:178167600-178187000	Weak transcription	Left Ventricle	heart
8	chr2:178172400-178187200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:178175200-178187000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:178175200-178203000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:178175600-178191200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr2:178175600-178191600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:178175600-178191800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr2:178175800-178187000	Weak transcription	Dnd41	blood
15	chr2:178175800-178191000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:178176200-178191600	Weak transcription	Thymus	Thymus
17	chr2:178176400-178191400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr2:178178600-178187200	Weak transcription	Gastric	stomach
19	chr2:178178600-178191200	Weak transcription	Aorta	Aorta
20	chr2:178179000-178187200	Weak transcription	Primary B cells from cord blood	blood
21	chr2:178179200-178196600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:178179600-178187200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:178179800-178186800	Weak transcription	Brain Anterior Caudate	brain
24	chr2:178179800-178189400	Weak transcription	HSMMtube	muscle
25	chr2:178179800-178190000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:178179800-178191800	Weak transcription	K562	blood
27	chr2:178179800-178196800	Weak transcription	Fetal Brain Female	brain
28	chr2:178179800-178196800	Weak transcription	Osteobl	bone
29	chr2:178180400-178186800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:178180400-178187200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:178180400-178187200	Weak transcription	Fetal Muscle Leg	muscle
32	chr2:178180400-178196400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:178180600-178187000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr2:178180800-178196400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:178181000-178187000	Weak transcription	Fetal Kidney	kidney
36	chr2:178181200-178187200	Weak transcription	Esophagus	oesophagus
37	chr2:178182000-178190000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:178182000-178192000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr2:178182400-178196800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr2:178182800-178187000	Weak transcription	Fetal Intestine Large	intestine
41	chr2:178182800-178187000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:178182800-178196600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr2:178183000-178187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr2:178183000-178187200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr2:178183200-178187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr2:178183200-178187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr2:178183200-178187000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr2:178183200-178187000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:178183200-178187000	Weak transcription	NHEK	skin
50	chr2:178183200-178187200	Weak transcription	Stomach Mucosa	stomach

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