Variant report

Variant	rs55848656
Chromosome Location	chr2:178184003-178184004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178182570..178184166-chr2:178255173..178257437,2	K562	blood:
2	chr2:178080006..178081846-chr2:178183678..178185217,2	K562	blood:
3	chr2:178183578..178185766-chr2:178188383..178190499,2	K562	blood:
4	chr2:178182303..178184574-chr2:178184601..178186122,2	MCF-7	breast:
5	chr2:178026960..178029797-chr2:178182275..178184566,2	MCF-7	breast:
6	chr2:178128279..178132263-chr2:178181340..178186322,4	MCF-7	breast:
7	chr2:178123678..178126348-chr2:178183923..178185546,2	K562	blood:

Variant related genes	Relation type
ENSG00000236501	Chromatin interaction
ENSG00000018510	Chromatin interaction
ENSG00000222043	Chromatin interaction
ENSG00000116044	Chromatin interaction
ENSG00000170144	Chromatin interaction
ENSG00000213963	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10175252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187221	0.82[EUR][1000 genomes]
rs10187323	0.82[EUR][1000 genomes]
rs10198518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207495	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12104688	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13392350	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394038	0.82[EUR][1000 genomes]
rs13410559	0.84[AFR][1000 genomes]
rs13426818	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429924	0.82[EUR][1000 genomes]
rs1453374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865143	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16865148	1.00[ASN][1000 genomes]
rs16865163	0.82[EUR][1000 genomes]
rs2246448	0.89[ASN][1000 genomes]
rs2602534	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2602535	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2706142	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56174568	0.82[EUR][1000 genomes]
rs56181372	0.82[EUR][1000 genomes]
rs56806189	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57010642	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58583364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59549243	0.82[EUR][1000 genomes]
rs60703179	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6414095	0.82[ASN][1000 genomes]
rs6720934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724177	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746113	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73035181	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035188	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035190	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035193	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73039071	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73039075	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73979713	0.82[EUR][1000 genomes]
rs73979718	0.82[EUR][1000 genomes]
rs73979722	0.82[EUR][1000 genomes]
rs73979724	0.82[EUR][1000 genomes]
rs73979728	0.82[EUR][1000 genomes]
rs7563082	0.82[ASN][1000 genomes]
rs7566319	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7566974	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7578962	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7581364	0.82[EUR][1000 genomes]
rs7602451	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs935948	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs935949	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178147800-178187000	Weak transcription	HSMM	muscle
2	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
5	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
6	chr2:178160800-178196200	Weak transcription	Ovary	ovary
7	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
8	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:178167600-178187000	Weak transcription	Left Ventricle	heart
10	chr2:178172400-178187200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:178175200-178185000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:178175200-178187000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:178175200-178203000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:178175400-178185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:178175400-178186600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:178175600-178185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:178175600-178191200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:178175600-178191600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:178175600-178191800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:178175800-178184600	Weak transcription	Primary T cells from cord blood	blood
21	chr2:178175800-178187000	Weak transcription	Dnd41	blood
22	chr2:178175800-178191000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr2:178176200-178191600	Weak transcription	Thymus	Thymus
24	chr2:178176400-178191400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr2:178178600-178187200	Weak transcription	Gastric	stomach
26	chr2:178178600-178191200	Weak transcription	Aorta	Aorta
27	chr2:178179000-178187200	Weak transcription	Primary B cells from cord blood	blood
28	chr2:178179200-178196600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:178179600-178187200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:178179800-178185400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:178179800-178186800	Weak transcription	Brain Anterior Caudate	brain
32	chr2:178179800-178189400	Weak transcription	HSMMtube	muscle
33	chr2:178179800-178190000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:178179800-178191800	Weak transcription	K562	blood
35	chr2:178179800-178196800	Weak transcription	Fetal Brain Female	brain
36	chr2:178179800-178196800	Weak transcription	Osteobl	bone
37	chr2:178180000-178185200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:178180400-178185800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:178180400-178186400	Weak transcription	Brain Substantia Nigra	brain
40	chr2:178180400-178186800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr2:178180400-178187200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:178180400-178187200	Weak transcription	Fetal Muscle Leg	muscle
43	chr2:178180400-178196400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:178180600-178187000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr2:178180800-178196400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:178181000-178187000	Weak transcription	Fetal Kidney	kidney
47	chr2:178181200-178187200	Weak transcription	Esophagus	oesophagus
48	chr2:178181400-178185000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:178182000-178190000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:178182000-178192000	Weak transcription	Primary T cells fromperipheralblood	blood

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