Variant report

Variant	rs73039071
Chromosome Location	chr2:178201352-178201353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178200914..178202692-chr2:178620399..178622390,2	K562	blood:
2	chr2:178126296..178129647-chr2:178201279..178205909,5	K562	blood:
3	chr2:178201112..178201875-chr2:178280649..178281391,3	MCF-7	breast:
4	chr2:178013028..178015383-chr2:178200268..178203117,2	K562	blood:
5	chr2:178078984..178080671-chr2:178199886..178201809,2	K562	blood:
6	chr2:178187416..178191009-chr2:178199776..178203917,4	K562	blood:
7	chr2:178192691..178195297-chr2:178200068..178202919,2	K562	blood:
8	chr2:178200874..178203200-chr2:178268312..178271320,3	K562	blood:
9	chr2:178199929..178202239-chr2:178204992..178206709,2	K562	blood:
10	chr2:178200058..178202782-chr2:178255287..178258460,3	K562	blood:
11	chr2:178125506..178127319-chr2:178199842..178201994,2	K562	blood:
12	chr2:178127949..178130011-chr2:178198809..178201517,2	K562	blood:
13	chr2:178199607..178202541-chr2:178258032..178259848,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000116044	Chromatin interaction
ENSG00000213963	Chromatin interaction
ENSG00000222043	Chromatin interaction
ENSG00000018510	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10166244	0.81[ASN][1000 genomes]
rs10175252	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10175660	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10175662	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10176950	0.81[ASN][1000 genomes]
rs10179975	0.81[ASN][1000 genomes]
rs10187221	0.82[EUR][1000 genomes]
rs10187323	0.82[EUR][1000 genomes]
rs10198518	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10207495	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10207932	0.81[ASN][1000 genomes]
rs10930783	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10930784	0.81[ASN][1000 genomes]
rs11681133	0.81[ASN][1000 genomes]
rs11692099	0.81[ASN][1000 genomes]
rs11692146	0.81[ASN][1000 genomes]
rs12104688	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12987686	0.81[ASN][1000 genomes]
rs13011915	0.81[ASN][1000 genomes]
rs13017003	0.81[ASN][1000 genomes]
rs13017227	0.81[ASN][1000 genomes]
rs13392350	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13394038	0.82[EUR][1000 genomes]
rs13426818	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13429924	0.82[EUR][1000 genomes]
rs1453374	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1453375	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16865143	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16865148	0.95[ASN][1000 genomes]
rs16865163	0.82[EUR][1000 genomes]
rs2246448	0.84[ASN][1000 genomes]
rs2364848	0.81[ASN][1000 genomes]
rs2602534	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2602535	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2706142	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4130304	0.81[ASN][1000 genomes]
rs55848656	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56174568	0.82[EUR][1000 genomes]
rs56181372	0.82[EUR][1000 genomes]
rs56806189	1.00[EUR][1000 genomes]
rs57010642	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58583364	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59549243	0.82[EUR][1000 genomes]
rs60703179	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6720934	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6720970	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6724177	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6735504	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6744247	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6746113	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035181	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73035188	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73035190	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73035193	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73039075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73979713	0.82[EUR][1000 genomes]
rs73979718	0.82[EUR][1000 genomes]
rs73979722	0.82[EUR][1000 genomes]
rs73979724	0.82[EUR][1000 genomes]
rs73979728	0.82[EUR][1000 genomes]
rs7566319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566974	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7575328	0.81[ASN][1000 genomes]
rs7578962	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7581364	0.82[EUR][1000 genomes]
rs7602451	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs935948	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs935949	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178175200-178203000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:178187600-178216400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:178187800-178210800	Weak transcription	Left Ventricle	heart
4	chr2:178187800-178216400	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:178190600-178202600	Weak transcription	NHDF-Ad	bronchial
6	chr2:178191600-178202800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:178192000-178201800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:178193200-178202800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:178194000-178202600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:178195200-178213600	Weak transcription	Gastric	stomach
11	chr2:178195400-178211400	Weak transcription	Fetal Intestine Small	intestine
12	chr2:178197000-178202600	Weak transcription	Osteobl	bone
13	chr2:178197000-178203800	Weak transcription	Brain Anterior Caudate	brain
14	chr2:178197000-178207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:178197200-178202600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:178197200-178202600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr2:178197200-178202600	Weak transcription	NHEK	skin
18	chr2:178197200-178202800	Weak transcription	Adipose Nuclei	Adipose
19	chr2:178197200-178202800	Weak transcription	GM12878-XiMat	blood
20	chr2:178197200-178203200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr2:178197200-178204800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:178197200-178211800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr2:178197200-178211800	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:178197200-178212000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:178197200-178213400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:178197200-178215000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:178197200-178216800	Weak transcription	Primary T cells from cord blood	blood
28	chr2:178197200-178217600	Weak transcription	Primary B cells from cord blood	blood
29	chr2:178197600-178202000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:178197600-178202200	Weak transcription	Stomach Mucosa	stomach
31	chr2:178197600-178202600	Weak transcription	NH-A	brain
32	chr2:178197600-178202800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr2:178197600-178211200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr2:178197600-178217200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr2:178197800-178202600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:178197800-178202600	Weak transcription	HMEC	breast
37	chr2:178197800-178202600	Weak transcription	NHLF	lung
38	chr2:178197800-178202800	Weak transcription	HSMMtube	muscle
39	chr2:178197800-178204800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr2:178197800-178211400	Weak transcription	Fetal Heart	heart
41	chr2:178197800-178214000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:178197800-178215400	Weak transcription	Dnd41	blood
43	chr2:178198000-178202200	Weak transcription	Hela-S3	cervix
44	chr2:178198000-178202600	Weak transcription	A549	lung
45	chr2:178198000-178202800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr2:178198000-178202800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr2:178198000-178203200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr2:178198000-178205600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr2:178198000-178206200	Weak transcription	Fetal Kidney	kidney
50	chr2:178198000-178210600	Weak transcription	HepG2	liver

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