Variant report

Variant	rs2706142
Chromosome Location	chr2:178168166-178168167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178159535..178161054-chr2:178165959..178168725,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10175252	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175660	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175662	0.89[ASN][1000 genomes]
rs10198518	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10207495	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930782	0.82[ASN][1000 genomes]
rs10930783	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12104688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002088	0.82[ASN][1000 genomes]
rs13392350	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13426818	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1453374	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1453375	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16865143	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865148	0.89[ASN][1000 genomes]
rs2246448	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364733	0.82[ASN][1000 genomes]
rs2444562	0.82[EUR][1000 genomes]
rs2602532	0.82[EUR][1000 genomes]
rs2602534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706149	0.82[EUR][1000 genomes]
rs2706151	0.82[EUR][1000 genomes]
rs2706159	0.82[EUR][1000 genomes]
rs55848656	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56806189	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57010642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583364	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59207362	0.82[EUR][1000 genomes]
rs60703179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433660	0.82[EUR][1000 genomes]
rs6720934	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6720970	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6724177	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6735504	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6744247	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6746113	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73035181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035188	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035190	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035193	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73039071	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73039075	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7566319	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7566974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935949	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
2	chr2:178147800-178187000	Weak transcription	HSMM	muscle
3	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:178152000-178171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:178156400-178172000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:178157800-178171600	Weak transcription	Primary T cells from cord blood	blood
11	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
12	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
13	chr2:178160800-178196200	Weak transcription	Ovary	ovary
14	chr2:178161200-178171200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:178163400-178168200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:178163400-178171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:178163600-178177800	Weak transcription	HepG2	liver
18	chr2:178163600-178178200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:178165000-178174000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:178165200-178173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
22	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:178166800-178169000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:178167600-178187000	Weak transcription	Left Ventricle	heart
27	chr2:178167800-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:178167800-178175800	Weak transcription	Primary B cells from cord blood	blood
29	chr2:178168000-178169000	Weak transcription	Psoas Muscle	Psoas

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