Variant report

Variant	rs2706159
Chromosome Location	chr2:178156770-178156771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:178156745-178156798	ProgFib	skin:	n/a	n/a
2	MAFK	chr2:178156747-178156803	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178127315..178131627-chr2:178155428..178160936,10	MCF-7	breast:
2	chr2:178128746..178130573-chr2:178154550..178157397,2	MCF-7	breast:

Variant related genes	Relation type
NFE2L2	TF binding region
ENSG00000116044	Chromatin interaction
ENSG00000222043	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12104688	0.82[EUR][1000 genomes]
rs13394038	0.93[ASW][hapmap];0.89[GIH][hapmap]
rs1453375	0.86[ASW][hapmap];0.90[GIH][hapmap]
rs16865143	0.82[EUR][1000 genomes]
rs16865163	0.85[ASW][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs2444562	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2602532	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2602534	0.82[EUR][1000 genomes]
rs2602535	0.82[EUR][1000 genomes]
rs2706142	0.82[EUR][1000 genomes]
rs2706149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2706151	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57010642	0.82[EUR][1000 genomes]
rs59207362	1.00[EUR][1000 genomes]
rs60703179	0.82[EUR][1000 genomes]
rs6433660	0.90[GIH][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6720934	0.86[ASW][hapmap];0.90[GIH][hapmap]
rs6744247	0.86[ASW][hapmap];0.90[GIH][hapmap]
rs6746113	0.90[GIH][hapmap]
rs73035181	0.82[EUR][1000 genomes]
rs7566974	0.82[EUR][1000 genomes]
rs7578962	0.90[GIH][hapmap];0.82[EUR][1000 genomes]
rs7602451	0.82[EUR][1000 genomes]
rs935948	0.82[EUR][1000 genomes]
rs935949	0.82[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178145000-178160200	Weak transcription	Adipose Nuclei	Adipose
2	chr2:178145600-178160200	Weak transcription	Aorta	Aorta
3	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
4	chr2:178147400-178160000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:178147400-178160200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:178147600-178160400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:178147800-178163000	Weak transcription	Hela-S3	cervix
8	chr2:178147800-178187000	Weak transcription	HSMM	muscle
9	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:178148800-178160000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:178148800-178160200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:178149000-178160200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:178150200-178160200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:178150200-178160200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:178151400-178157600	Weak transcription	Fetal Intestine Small	intestine
16	chr2:178151400-178157600	Weak transcription	HepG2	liver
17	chr2:178151400-178167200	Weak transcription	Left Ventricle	heart
18	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr2:178152000-178171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:178152400-178160200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr2:178152800-178160200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:178153200-178160200	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:178153200-178160200	Weak transcription	Ovary	ovary
25	chr2:178153200-178160200	Weak transcription	Stomach Mucosa	stomach
26	chr2:178155200-178156800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr2:178155200-178156800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr2:178155400-178156800	Enhancers	GM12878-XiMat	blood
29	chr2:178155400-178157200	Enhancers	Primary T cells from cord blood	blood
30	chr2:178155600-178160200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:178155600-178160400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr2:178155800-178166600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:178155800-178167000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:178155800-178167400	Weak transcription	Primary B cells from cord blood	blood
36	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr2:178156200-178160400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr2:178156400-178160000	Weak transcription	Liver	Liver
39	chr2:178156400-178160600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr2:178156400-178172000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr2:178156600-178156800	Enhancers	Thymus	Thymus

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