Variant report

Variant	rs73035181
Chromosome Location	chr2:178171935-178171936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10175252	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175660	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175662	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10198518	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10207495	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930782	0.82[ASN][1000 genomes]
rs10930783	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12104688	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002088	0.82[ASN][1000 genomes]
rs13392350	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13426818	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1453374	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1453375	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16865143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865148	0.89[ASN][1000 genomes]
rs2246448	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364733	0.82[ASN][1000 genomes]
rs2444562	0.82[EUR][1000 genomes]
rs2602532	0.82[EUR][1000 genomes]
rs2602534	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706149	0.82[EUR][1000 genomes]
rs2706151	0.82[EUR][1000 genomes]
rs2706159	0.82[EUR][1000 genomes]
rs55848656	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56806189	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57010642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583364	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59207362	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs60703179	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433660	0.82[EUR][1000 genomes]
rs6720934	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6720970	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6724177	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6735504	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6744247	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6746113	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73035188	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035190	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035193	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73039071	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73039075	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7566319	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7566974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935948	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
2	chr2:178147800-178187000	Weak transcription	HSMM	muscle
3	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr2:178156400-178172000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
10	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
11	chr2:178160800-178196200	Weak transcription	Ovary	ovary
12	chr2:178163600-178177800	Weak transcription	HepG2	liver
13	chr2:178163600-178178200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:178165000-178174000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:178165200-178173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
17	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:178167600-178187000	Weak transcription	Left Ventricle	heart
21	chr2:178167800-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:178167800-178175800	Weak transcription	Primary B cells from cord blood	blood
23	chr2:178168600-178178400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:178169000-178174800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:178171200-178172000	Enhancers	HMEC	breast
26	chr2:178171200-178172000	Enhancers	K562	blood
27	chr2:178171200-178172000	Enhancers	NHEK	skin
28	chr2:178171200-178172400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:178171400-178173000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:178171400-178175800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr2:178171400-178175800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr2:178171600-178172400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:178171600-178172600	Enhancers	Primary T cells from cord blood	blood
34	chr2:178171600-178177600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:178171600-178177800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:178171600-178177800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:178171800-178174400	Enhancers	Fetal Heart	heart
38	chr2:178171800-178175600	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr2:178171800-178176400	Enhancers	Primary T helper cells PMA-I stimulated	--

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