Variant report

Variant	rs7578962
Chromosome Location	chr2:178173955-178173956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178161574..178163078-chr2:178172533..178174377,2	K562	blood:
2	chr2:178127778..178130312-chr2:178172784..178174520,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222043	Chromatin interaction
ENSG00000116044	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10175252	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175660	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175662	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10179975	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10184488	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10187323	0.81[YRI][hapmap]
rs10190306	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10198518	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10207495	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10207932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497505	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497506	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497509	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10754987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10754988	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10803911	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930782	0.82[ASN][1000 genomes]
rs10930783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10930784	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930788	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11681133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12104688	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13017003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13017227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13392350	1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13394038	0.86[ASW][hapmap];1.00[GIH][hapmap]
rs13426818	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1453374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1453375	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1530965	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865143	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865148	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16865163	1.00[GIH][hapmap]
rs16865187	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865191	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1901823	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2167902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2218575	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2246448	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272529	1.00[JPT][hapmap]
rs2364733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2364848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2364851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2364852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2444562	0.82[EUR][1000 genomes]
rs2602532	0.82[EUR][1000 genomes]
rs2602534	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706149	0.82[EUR][1000 genomes]
rs2706151	0.82[EUR][1000 genomes]
rs2706159	0.90[GIH][hapmap];0.82[EUR][1000 genomes]
rs3754989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3813260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4130304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4402804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4585065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893930	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893955	1.00[CHB][hapmap]
rs55848656	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56806189	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57010642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583364	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59207362	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs60703179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6414095	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6433660	1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs6433666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6720934	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6720970	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6724177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6725331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6732250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6735504	1.00[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6740092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6744247	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6746113	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73035181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035188	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035190	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035193	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73039071	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73039075	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7566319	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7566974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7575328	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7585952	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7594073	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7601132	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7602451	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs935948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935949	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
2	chr2:178147800-178187000	Weak transcription	HSMM	muscle
3	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
9	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
10	chr2:178160800-178196200	Weak transcription	Ovary	ovary
11	chr2:178163600-178177800	Weak transcription	HepG2	liver
12	chr2:178163600-178178200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:178165000-178174000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
15	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:178167600-178187000	Weak transcription	Left Ventricle	heart
19	chr2:178167800-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:178167800-178175800	Weak transcription	Primary B cells from cord blood	blood
21	chr2:178168600-178178400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:178169000-178174800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:178171400-178175800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr2:178171400-178175800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr2:178171600-178177600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:178171600-178177800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:178171600-178177800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:178171800-178174400	Enhancers	Fetal Heart	heart
29	chr2:178171800-178175600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr2:178171800-178176400	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr2:178172400-178175600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr2:178172400-178177600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:178172400-178187200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:178172600-178175600	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr2:178173200-178176200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr2:178173600-178174000	Enhancers	Primary T cells from cord blood	blood
37	chr2:178173600-178174200	Enhancers	Dnd41	blood
38	chr2:178173600-178175600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr2:178173800-178175600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr2:178173800-178179600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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