Variant report

Variant	rs6744247
Chromosome Location	chr2:178183336-178183337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr2:178183298-178183563	HepG2	liver:	n/a	n/a
2	FOXA1	chr2:178183314-178183714	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178182570..178184166-chr2:178255173..178257437,2	K562	blood:
2	chr2:178182303..178184574-chr2:178184601..178186122,2	MCF-7	breast:
3	chr2:178181182..178183753-chr2:178184341..178186622,2	K562	blood:
4	chr2:178026960..178029797-chr2:178182275..178184566,2	MCF-7	breast:
5	chr2:178128279..178132263-chr2:178181340..178186322,4	MCF-7	breast:
6	chr2:178177013..178178941-chr2:178181297..178183451,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000213963	TF binding region
ENSG00000236501	Chromatin interaction
ENSG00000018510	Chromatin interaction
ENSG00000213963	Chromatin interaction
ENSG00000222043	Chromatin interaction
ENSG00000116044	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10175252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179975	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10184488	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10187221	0.82[EUR][1000 genomes]
rs10187323	0.85[YRI][hapmap];0.82[EUR][1000 genomes]
rs10190306	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10198518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207495	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497505	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497506	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10497509	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10754987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10754988	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10803911	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930783	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930784	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930788	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11681133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12104688	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12478545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002088	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13017003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13017227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13392350	1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394038	0.80[ASW][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs13410559	0.84[AFR][1000 genomes]
rs13426818	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429924	0.82[EUR][1000 genomes]
rs1374438	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1453374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453375	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530965	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16865148	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16865163	1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs16865187	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865191	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865322	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16865324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1901823	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2167902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2218575	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2246448	0.89[ASN][1000 genomes]
rs2272529	1.00[JPT][hapmap]
rs2364733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2364848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2364851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2364852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2602534	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2602535	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2706142	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2706159	0.86[ASW][hapmap];0.90[GIH][hapmap]
rs3754989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3813260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4130304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4402804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4585065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893930	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893955	1.00[CHB][hapmap]
rs55848656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56174568	0.82[EUR][1000 genomes]
rs56181372	0.82[EUR][1000 genomes]
rs56806189	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57010642	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58583364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59549243	0.82[EUR][1000 genomes]
rs60703179	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6414095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6433660	1.00[GIH][hapmap]
rs6433666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6710109	1.00[JPT][hapmap]
rs6720934	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724177	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6732250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6735504	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6746113	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73035181	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035188	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035190	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035193	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73039071	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73039075	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73979713	0.82[EUR][1000 genomes]
rs73979718	0.82[EUR][1000 genomes]
rs73979722	0.82[EUR][1000 genomes]
rs73979724	0.82[EUR][1000 genomes]
rs73979728	0.82[EUR][1000 genomes]
rs7563082	0.82[ASN][1000 genomes]
rs7566319	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7566974	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7570297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7575328	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7578962	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7581364	0.82[EUR][1000 genomes]
rs7585952	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7594073	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7601132	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7602451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs935426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs935948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs935949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178147800-178187000	Weak transcription	HSMM	muscle
2	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
5	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
6	chr2:178160800-178196200	Weak transcription	Ovary	ovary
7	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
8	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:178167600-178187000	Weak transcription	Left Ventricle	heart
10	chr2:178172400-178187200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:178175200-178185000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:178175200-178187000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:178175200-178203000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:178175400-178185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:178175400-178186600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:178175600-178185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:178175600-178191200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:178175600-178191600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:178175600-178191800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:178175800-178184600	Weak transcription	Primary T cells from cord blood	blood
21	chr2:178175800-178187000	Weak transcription	Dnd41	blood
22	chr2:178175800-178191000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr2:178176200-178191600	Weak transcription	Thymus	Thymus
24	chr2:178176400-178191400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr2:178177800-178183600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr2:178178600-178187200	Weak transcription	Gastric	stomach
27	chr2:178178600-178191200	Weak transcription	Aorta	Aorta
28	chr2:178178800-178183400	Enhancers	Liver	Liver
29	chr2:178179000-178187200	Weak transcription	Primary B cells from cord blood	blood
30	chr2:178179200-178196600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:178179600-178187200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:178179800-178185400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:178179800-178186800	Weak transcription	Brain Anterior Caudate	brain
34	chr2:178179800-178189400	Weak transcription	HSMMtube	muscle
35	chr2:178179800-178190000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:178179800-178191800	Weak transcription	K562	blood
37	chr2:178179800-178196800	Weak transcription	Fetal Brain Female	brain
38	chr2:178179800-178196800	Weak transcription	Osteobl	bone
39	chr2:178180000-178185200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:178180400-178185800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:178180400-178186400	Weak transcription	Brain Substantia Nigra	brain
42	chr2:178180400-178186800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:178180400-178187200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:178180400-178187200	Weak transcription	Fetal Muscle Leg	muscle
45	chr2:178180400-178196400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr2:178180600-178187000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:178180800-178196400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr2:178181000-178184000	Enhancers	HepG2	liver
49	chr2:178181000-178187000	Weak transcription	Fetal Kidney	kidney
50	chr2:178181200-178187200	Weak transcription	Esophagus	oesophagus

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