Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10181816	1.00[CHB][hapmap]
rs10184702	1.00[CHB][hapmap]
rs10197209	1.00[CHB][hapmap]
rs10497573	1.00[CHB][hapmap]
rs10930765	1.00[JPT][hapmap]
rs10930767	1.00[JPT][hapmap]
rs12469347	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12616782	1.00[JPT][hapmap]
rs12693105	1.00[CHB][hapmap]
rs13005005	1.00[JPT][hapmap]
rs13421731	1.00[JPT][hapmap]
rs1355845	1.00[JPT][hapmap]
rs1437725	1.00[CHB][hapmap]
rs1513870	0.91[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1513886	1.00[CHB][hapmap]
rs1533303	1.00[CHB][hapmap]
rs1534472	1.00[CHB][hapmap]
rs1545138	1.00[CHB][hapmap]
rs16864479	1.00[CHB][hapmap]
rs16864736	1.00[JPT][hapmap]
rs17628074	1.00[JPT][hapmap]
rs17679370	1.00[JPT][hapmap]
rs1814826	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866134	1.00[JPT][hapmap]
rs2196658	0.84[ASN][1000 genomes]
rs4893917	1.00[CHB][hapmap]
rs6707899	1.00[JPT][hapmap]
rs6760271	1.00[JPT][hapmap]
rs7588841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs840698	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs840699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs840700	0.81[ASN][1000 genomes]
rs840701	0.81[ASN][1000 genomes]
rs840702	0.81[ASN][1000 genomes]
rs840703	0.81[ASN][1000 genomes]
rs840704	0.81[ASN][1000 genomes]
rs840706	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860864	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7583729	WIPF1	cis	cerebellum	SCAN
rs7583729	OLA1	cis	parietal	SCAN
rs7583729	ZAK	cis	cerebellum	SCAN
rs7583729	GTSF1L	trans	cerebellum	SCAN
rs7583729	CHN1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177697200-177698600	Weak transcription	Fetal Stomach	stomach
2	chr2:177697800-177699000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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