Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:177709989..177710952-chr2:177737048..177737724,2	MCF-7	breast:
2	chr2:177710576..177713068-chr2:177724579..177727566,2	MCF-7	breast:
3	chr2:177710512..177712113-chr2:177712141..177714677,2	MCF-7	breast:
4	chr2:177678711..177679684-chr2:177710502..177711032,2	MCF-7	breast:
5	chr2:177706787..177708397-chr2:177708652..177711136,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NFE2L2-3	chr2:177710784-177711105	XLOC_002411
2	lnc-HNRNPA3-4	chr2:177710393-177711108	NONHSAT075682
3	lnc-NFE2L2-3	chr2:177709594-177711105	NONHSAT075684

No data

Variant related genes	Relation type
ENSG00000227098	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10930765	1.00[JPT][hapmap]
rs10930767	1.00[JPT][hapmap]
rs12469347	1.00[JPT][hapmap]
rs12469859	0.81[ASN][1000 genomes]
rs12614055	0.81[ASN][1000 genomes]
rs12615378	0.92[ASN][1000 genomes]
rs12616782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13005005	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13421731	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1344900	0.92[ASN][1000 genomes]
rs1398968	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1513870	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1561278	0.81[ASN][1000 genomes]
rs16864736	1.00[JPT][hapmap]
rs17626597	0.96[ASN][1000 genomes]
rs17627058	0.81[ASN][1000 genomes]
rs17628074	1.00[JPT][hapmap]
rs17679370	1.00[JPT][hapmap]
rs1866134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028186	0.85[ASN][1000 genomes]
rs2028187	0.85[ASN][1000 genomes]
rs4145341	0.81[ASN][1000 genomes]
rs56159313	0.81[ASN][1000 genomes]
rs56879349	0.81[ASN][1000 genomes]
rs6707899	1.00[JPT][hapmap]
rs6760271	1.00[JPT][hapmap]
rs714080	0.81[ASN][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]
rs961425	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459953	chr2:177704321-177720675	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv583687	chr2:177704321-177720675	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1355845	CIR1	cis	cerebellum	SCAN
rs1355845	OLA1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177708200-177711600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:177708400-177711400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr2:177710000-177716800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:177710600-177716000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:177710800-177715000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:177710800-177716600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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