Variant report

Variant	rs17626597
Chromosome Location	chr2:177744731-177744732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10930765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12469347	1.00[JPT][hapmap]
rs12469859	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12614055	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12615378	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12616782	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13005005	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13421731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1344900	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1355845	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1398968	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513870	1.00[JPT][hapmap]
rs1561278	0.84[ASN][1000 genomes]
rs16864736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17627058	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17628074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866134	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2028186	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2028187	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4145341	0.84[ASN][1000 genomes]
rs56159313	0.84[ASN][1000 genomes]
rs56879349	0.84[ASN][1000 genomes]
rs6707899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6760271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs714080	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]
rs961425	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17626597	OLA1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177744000-177745400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:177744400-177745400	Enhancers	Colon Smooth Muscle	Colon

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