Variant report
| Variant | rs56879349 |
|---|---|
| Chromosome Location | chr2:177736227-177736228 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227098 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10497470 | 0.86[ASN][1000 genomes] |
| rs10930768 | 0.86[ASN][1000 genomes] |
| rs1153664 | 0.89[EUR][1000 genomes] |
| rs11885605 | 0.86[ASN][1000 genomes] |
| rs12612709 | 0.87[EUR][1000 genomes] |
| rs12616782 | 0.81[ASN][1000 genomes] |
| rs13005005 | 0.81[ASN][1000 genomes] |
| rs13410052 | 0.86[ASN][1000 genomes] |
| rs13410244 | 0.86[ASN][1000 genomes] |
| rs13421731 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1355845 | 0.81[ASN][1000 genomes] |
| rs1355854 | 0.90[EUR][1000 genomes] |
| rs1370538 | 0.86[ASN][1000 genomes] |
| rs1370540 | 0.86[ASN][1000 genomes] |
| rs1370541 | 0.86[ASN][1000 genomes] |
| rs1398968 | 0.84[ASN][1000 genomes] |
| rs1398977 | 0.91[EUR][1000 genomes] |
| rs1405614 | 0.91[EUR][1000 genomes] |
| rs1527265 | 0.89[EUR][1000 genomes] |
| rs1527270 | 0.91[EUR][1000 genomes] |
| rs17626597 | 0.84[ASN][1000 genomes] |
| rs1819008 | 0.88[ASN][1000 genomes] |
| rs1866134 | 0.81[ASN][1000 genomes] |
| rs3884986 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4894207 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56159313 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61177850 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6433618 | 0.87[EUR][1000 genomes] |
| rs6755082 | 0.86[ASN][1000 genomes] |
| rs6760271 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7557836 | 0.86[ASN][1000 genomes] |
| rs7562938 | 0.91[EUR][1000 genomes] |
| rs7591381 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv3050 | chr2:177713430-177760533 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177735400-177738000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
