Variant report

Variant	rs7562938
Chromosome Location	chr2:177734996-177734997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177732616..177735367-chr2:177737651..177739321,2	K562	blood:
2	chr2:177712628..177715536-chr2:177734631..177736747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227098	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10186950	0.90[ASN][1000 genomes]
rs10930765	0.90[ASN][1000 genomes]
rs10930766	0.90[ASN][1000 genomes]
rs10930767	0.90[ASN][1000 genomes]
rs10930772	0.90[ASN][1000 genomes]
rs1153664	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12612709	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13421731	0.91[EUR][1000 genomes]
rs13422461	0.90[ASN][1000 genomes]
rs1355854	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398967	1.00[ASN][1000 genomes]
rs1398969	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1398977	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405614	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513870	0.91[ASN][1000 genomes]
rs1527265	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1527266	0.90[ASN][1000 genomes]
rs1527270	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16864736	0.90[ASN][1000 genomes]
rs17628074	0.90[ASN][1000 genomes]
rs17679370	0.90[ASN][1000 genomes]
rs2196658	0.91[ASN][1000 genomes]
rs2696966	0.90[ASN][1000 genomes]
rs4894207	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159313	0.91[EUR][1000 genomes]
rs56879349	0.91[EUR][1000 genomes]
rs61177850	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433618	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433624	0.90[ASN][1000 genomes]
rs6710025	0.90[ASN][1000 genomes]
rs6760271	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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