Variant report

Variant	rs1153664
Chromosome Location	chr2:177752800-177752801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12612709	0.85[EUR][1000 genomes]
rs13421731	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1355854	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1398977	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1405614	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1527265	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527270	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4894207	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56159313	0.89[EUR][1000 genomes]
rs56879349	0.89[EUR][1000 genomes]
rs61177850	0.90[EUR][1000 genomes]
rs6433618	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6760271	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7562938	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1153664	OLA1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177751200-177758600	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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