Variant report

Variant	rs6760271
Chromosome Location	chr2:177736626-177736627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177708529..177710912-chr2:177735579..177738159,2	MCF-7	breast:
2	chr2:177712628..177715536-chr2:177734631..177736747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227098	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10186950	0.90[ASN][1000 genomes]
rs10930765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10930766	0.90[ASN][1000 genomes]
rs10930767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10930772	0.90[ASN][1000 genomes]
rs1153664	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12469347	1.00[JPT][hapmap]
rs12612709	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12616782	1.00[JPT][hapmap]
rs13005005	1.00[JPT][hapmap]
rs13421731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13422461	0.90[ASN][1000 genomes]
rs1355845	1.00[JPT][hapmap]
rs1355854	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398967	1.00[ASN][1000 genomes]
rs1398969	1.00[ASN][1000 genomes]
rs1398977	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405614	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513870	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1527265	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1527266	0.90[ASN][1000 genomes]
rs1527270	0.92[EUR][1000 genomes]
rs16864736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17628074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17679370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1866134	1.00[JPT][hapmap]
rs2196658	0.91[ASN][1000 genomes]
rs2696966	0.90[ASN][1000 genomes]
rs4894207	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159313	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56879349	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61177850	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433618	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433624	0.90[ASN][1000 genomes]
rs6707899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6710025	0.90[ASN][1000 genomes]
rs7562938	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177735400-177738000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:177736600-177737000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:177736600-177738000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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