Variant report
Variant | rs13422461 |
---|---|
Chromosome Location | chr2:177833599-177833600 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:177821477..177823669-chr2:177830664..177833609,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10186950 | 1.00[ASN][1000 genomes] |
rs10930765 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs10930766 | 1.00[ASN][1000 genomes] |
rs10930767 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs10930772 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12469347 | 1.00[JPT][hapmap] |
rs12612709 | 1.00[ASN][1000 genomes] |
rs12616782 | 1.00[JPT][hapmap] |
rs13005005 | 1.00[JPT][hapmap] |
rs13421731 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1355845 | 1.00[JPT][hapmap] |
rs1355854 | 0.90[ASN][1000 genomes] |
rs1398967 | 0.90[ASN][1000 genomes] |
rs1398969 | 0.90[ASN][1000 genomes] |
rs1398977 | 0.90[ASN][1000 genomes] |
rs1405614 | 0.90[ASN][1000 genomes] |
rs1513870 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1527265 | 1.00[ASN][1000 genomes] |
rs1527266 | 1.00[ASN][1000 genomes] |
rs16864736 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs17628074 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs17679370 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs1866134 | 1.00[JPT][hapmap] |
rs2196658 | 0.82[ASN][1000 genomes] |
rs2696966 | 1.00[ASN][1000 genomes] |
rs4894207 | 0.90[ASN][1000 genomes] |
rs61177850 | 0.90[ASN][1000 genomes] |
rs6433618 | 0.90[ASN][1000 genomes] |
rs6433624 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6707899 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs6710025 | 1.00[ASN][1000 genomes] |
rs6760271 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs7562938 | 0.90[ASN][1000 genomes] |
rs7588841 | 1.00[JPT][hapmap] |
rs840698 | 1.00[JPT][hapmap] |
rs840699 | 1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875449 | chr2:177775612-177835010 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:177833400-177833600 | Enhancers | Fetal Muscle Leg | muscle |