Variant report

Variant	rs12612709
Chromosome Location	chr2:177759338-177759339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10186950	1.00[ASN][1000 genomes]
rs10497470	0.87[EUR][1000 genomes]
rs10930765	1.00[ASN][1000 genomes]
rs10930766	1.00[ASN][1000 genomes]
rs10930767	1.00[ASN][1000 genomes]
rs10930768	0.87[EUR][1000 genomes]
rs10930770	0.86[EUR][1000 genomes]
rs10930772	1.00[ASN][1000 genomes]
rs1153664	0.85[EUR][1000 genomes]
rs11885605	0.86[EUR][1000 genomes]
rs13410052	0.86[EUR][1000 genomes]
rs13410244	0.86[EUR][1000 genomes]
rs13421731	0.87[EUR][1000 genomes]
rs13422461	1.00[ASN][1000 genomes]
rs1355854	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1370538	0.86[EUR][1000 genomes]
rs1370540	0.86[EUR][1000 genomes]
rs1370541	0.87[EUR][1000 genomes]
rs1398967	0.90[ASN][1000 genomes]
rs1398969	0.90[ASN][1000 genomes]
rs1398977	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1405614	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1513870	0.82[ASN][1000 genomes]
rs1527265	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527266	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527270	0.83[EUR][1000 genomes]
rs16864736	1.00[ASN][1000 genomes]
rs17628074	1.00[ASN][1000 genomes]
rs17679370	1.00[ASN][1000 genomes]
rs2196658	0.82[ASN][1000 genomes]
rs2696966	1.00[ASN][1000 genomes]
rs3884986	0.87[EUR][1000 genomes]
rs4894207	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56159313	0.87[EUR][1000 genomes]
rs56879349	0.87[EUR][1000 genomes]
rs61177850	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433618	0.90[ASN][1000 genomes]
rs6433624	1.00[ASN][1000 genomes]
rs6710025	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755082	0.86[EUR][1000 genomes]
rs6760271	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7557836	0.87[EUR][1000 genomes]
rs7562938	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7591381	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177758600-177760000	Enhancers	Rectal Mucosa Donor 31	rectum

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