Variant report

Variant	rs3884986
Chromosome Location	chr2:177801770-177801771
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10497470	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930768	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930769	0.80[AFR][1000 genomes]
rs10930770	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11885605	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12469347	1.00[JPT][hapmap]
rs12469859	0.87[ASN][1000 genomes]
rs12612709	0.87[EUR][1000 genomes]
rs12614055	0.87[ASN][1000 genomes]
rs12616782	1.00[JPT][hapmap]
rs13005005	1.00[JPT][hapmap]
rs13410052	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410244	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1355845	1.00[JPT][hapmap]
rs1370538	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370540	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370541	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513870	1.00[JPT][hapmap]
rs1527266	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1561278	0.87[ASN][1000 genomes]
rs16864736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17627058	0.87[ASN][1000 genomes]
rs17628074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866134	1.00[JPT][hapmap]
rs2028186	0.83[ASN][1000 genomes]
rs2028187	0.83[ASN][1000 genomes]
rs4145341	0.87[ASN][1000 genomes]
rs4894221	0.81[AFR][1000 genomes]
rs56159313	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56879349	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6707899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6710025	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6755082	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs714080	0.87[ASN][1000 genomes]
rs73035099	0.81[AFR][1000 genomes]
rs7557836	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577255	0.81[AFR][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs7591381	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]
rs961425	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875448	chr2:177760005-177819108	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875449	chr2:177775612-177835010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875450	chr2:177785155-177819108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3459891	chr2:177799277-177802875	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3459892	chr2:177799277-177802875	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv12287	chr2:177799416-177802733	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177798800-177802200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:177800200-177801800	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:177800600-177801800	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:177800600-177802200	Enhancers	GM12878-XiMat	blood
5	chr2:177800800-177802000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:177801000-177802000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:177801600-177802200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:177801600-177805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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