Variant report

Variant	rs2028187
Chromosome Location	chr2:177758639-177758640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10497470	0.83[ASN][1000 genomes]
rs10930765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930768	0.83[ASN][1000 genomes]
rs11885605	0.83[ASN][1000 genomes]
rs12469347	1.00[JPT][hapmap]
rs12469859	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12613021	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12614055	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12615378	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12616782	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs13005005	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.85[ASN][1000 genomes]
rs13410052	0.83[ASN][1000 genomes]
rs13410244	0.83[ASN][1000 genomes]
rs13421731	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1344900	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1355845	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1370538	0.83[ASN][1000 genomes]
rs1370540	0.83[ASN][1000 genomes]
rs1370541	0.83[ASN][1000 genomes]
rs1398968	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1513870	1.00[JPT][hapmap]
rs1561278	0.96[ASN][1000 genomes]
rs16864736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17626597	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17627058	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17628074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866134	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2028186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3884986	0.83[ASN][1000 genomes]
rs4145341	0.96[ASN][1000 genomes]
rs4894197	1.00[YRI][hapmap]
rs4894222	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56146875	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6707899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6755082	0.83[ASN][1000 genomes]
rs6760271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs714080	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs745767	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7557836	0.83[ASN][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs7591381	0.83[ASN][1000 genomes]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]
rs961425	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3050	chr2:177713430-177760533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2028187	OLA1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177758600-177760000	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links