Variant report

Variant	rs1561278
Chromosome Location	chr2:177772193-177772194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177766314..177768526-chr2:177771832..177773844,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10497470	0.87[ASN][1000 genomes]
rs10930765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930768	0.87[ASN][1000 genomes]
rs11885605	0.87[ASN][1000 genomes]
rs12469347	1.00[JPT][hapmap]
rs12469859	1.00[ASN][1000 genomes]
rs12613021	0.87[ASN][1000 genomes]
rs12614055	1.00[ASN][1000 genomes]
rs12615378	0.88[ASN][1000 genomes]
rs12616782	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13005005	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13410052	0.87[ASN][1000 genomes]
rs13410244	0.87[ASN][1000 genomes]
rs13421731	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1344900	0.88[ASN][1000 genomes]
rs1355845	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1370538	0.87[ASN][1000 genomes]
rs1370540	0.87[ASN][1000 genomes]
rs1370541	0.87[ASN][1000 genomes]
rs1398968	0.84[ASN][1000 genomes]
rs1513870	1.00[JPT][hapmap]
rs16864736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17626597	0.84[ASN][1000 genomes]
rs17627058	1.00[ASN][1000 genomes]
rs17628074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866134	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2028186	0.96[ASN][1000 genomes]
rs2028187	0.96[ASN][1000 genomes]
rs3884986	0.87[ASN][1000 genomes]
rs4145341	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894222	0.87[ASN][1000 genomes]
rs56146875	0.88[ASN][1000 genomes]
rs6707899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6755082	0.87[ASN][1000 genomes]
rs6760271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs714080	1.00[ASN][1000 genomes]
rs745767	0.87[ASN][1000 genomes]
rs7557836	0.87[ASN][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs7591381	0.87[ASN][1000 genomes]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]
rs961425	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875448	chr2:177760005-177819108	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1561278	OLA1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177772000-177772400	Enhancers	Ovary	ovary

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