Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10930765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12469347	1.00[JPT][hapmap]
rs12469859	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12613021	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12614055	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12616782	1.00[JPT][hapmap]
rs13005005	1.00[JPT][hapmap];0.96[MEX][hapmap]
rs13421731	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1355845	1.00[JPT][hapmap]
rs1513870	1.00[JPT][hapmap]
rs1561278	0.87[ASN][1000 genomes]
rs16864736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17627058	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17628074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866134	1.00[JPT][hapmap]
rs2028186	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2028187	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4145341	0.87[ASN][1000 genomes]
rs4894222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56146875	0.83[EUR][1000 genomes]
rs6707899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6760271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs714080	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]
rs961425	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875449	chr2:177775612-177835010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs745767	OLA1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177822800-177827600	Enhancers	Brain Germinal Matrix	brain
2	chr2:177823600-177825600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:177824000-177826400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:177824200-177825800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:177824400-177825800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:177824600-177825600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:177824600-177825800	Enhancers	Fetal Brain Female	brain
8	chr2:177824800-177826000	Enhancers	Colon Smooth Muscle	Colon
9	chr2:177824800-177826800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:177825000-177825600	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:177825400-177825800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
12	chr2:177825400-177825800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:177825400-177826800	Enhancers	Primary monocytes fromperipheralblood	blood

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