Variant report

Variant	rs12469859
Chromosome Location	chr2:177793227-177793228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10497470	0.87[ASN][1000 genomes]
rs10930765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930768	0.87[ASN][1000 genomes]
rs11885605	0.87[ASN][1000 genomes]
rs12469347	1.00[JPT][hapmap]
rs12613021	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12614055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615378	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12616782	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs13005005	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13410052	0.87[ASN][1000 genomes]
rs13410244	0.87[ASN][1000 genomes]
rs13421731	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1344900	0.88[ASN][1000 genomes]
rs1355845	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1370538	0.87[ASN][1000 genomes]
rs1370540	0.87[ASN][1000 genomes]
rs1370541	0.87[ASN][1000 genomes]
rs1398968	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1513870	1.00[JPT][hapmap]
rs1561278	1.00[ASN][1000 genomes]
rs16864736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17626597	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17627058	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17679370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866134	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2028186	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2028187	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3884986	0.87[ASN][1000 genomes]
rs4145341	1.00[ASN][1000 genomes]
rs4894197	1.00[YRI][hapmap]
rs4894222	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56146875	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6707899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6755082	0.87[ASN][1000 genomes]
rs6760271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs714080	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745767	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7557836	0.87[ASN][1000 genomes]
rs7588841	1.00[JPT][hapmap]
rs7591381	0.87[ASN][1000 genomes]
rs840698	1.00[JPT][hapmap]
rs840699	1.00[JPT][hapmap]
rs961425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875448	chr2:177760005-177819108	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875449	chr2:177775612-177835010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875450	chr2:177785155-177819108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177792800-177796600	Weak transcription	Fetal Heart	heart

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