Variant report

Variant	rs840704
Chromosome Location	chr2:177690788-177690789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10184702	1.00[CHB][hapmap]
rs10197209	1.00[CHB][hapmap]
rs10497573	1.00[CHB][hapmap]
rs10930765	1.00[JPT][hapmap]
rs10930767	1.00[JPT][hapmap]
rs12469347	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12616782	1.00[JPT][hapmap]
rs12693105	1.00[CHB][hapmap]
rs13005005	1.00[JPT][hapmap]
rs13421731	1.00[JPT][hapmap]
rs1355845	1.00[JPT][hapmap]
rs1437725	1.00[CHB][hapmap]
rs1513870	1.00[JPT][hapmap]
rs1513886	1.00[CHB][hapmap]
rs1533303	1.00[CHB][hapmap]
rs1534472	1.00[CHB][hapmap]
rs1545138	1.00[CHB][hapmap]
rs16864479	1.00[CHB][hapmap]
rs16864736	1.00[JPT][hapmap]
rs17628074	1.00[JPT][hapmap]
rs17679370	1.00[JPT][hapmap]
rs1814826	0.81[ASN][1000 genomes]
rs1866134	1.00[JPT][hapmap]
rs4893917	1.00[CHB][hapmap]
rs6707899	1.00[JPT][hapmap]
rs6760271	1.00[JPT][hapmap]
rs7583729	0.81[ASN][1000 genomes]
rs7588841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs840685	0.82[ASN][1000 genomes]
rs840691	0.88[ASN][1000 genomes]
rs840698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs840699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840700	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840701	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840702	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840703	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840706	0.81[ASN][1000 genomes]
rs858958	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs860864	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177687400-177691400	Weak transcription	Fetal Kidney	kidney
2	chr2:177688800-177692600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr2:177688800-177693000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr2:177689000-177691200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr2:177689000-177692400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr2:177689000-177692400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr2:177689000-177693000	Enhancers	Primary T cells from cord blood	blood
8	chr2:177689000-177693000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:177689800-177691800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr2:177690400-177692600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:177690600-177691600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:177690600-177692400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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