Variant report

Variant	rs840691
Chromosome Location	chr2:177682663-177682664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:177682249..177683863-chr2:177688403..177690457,2	K562	blood:
2	chr2:177682122..177683030-chr2:178026373..178026894,2	MCF-7	breast:
3	chr2:177681927..177682692-chr2:178011755..178012476,4	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10184702	1.00[CHB][hapmap]
rs10197209	1.00[CHB][hapmap]
rs10497573	1.00[CHB][hapmap]
rs10930765	1.00[JPT][hapmap]
rs10930767	1.00[JPT][hapmap]
rs12469347	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12616782	1.00[JPT][hapmap]
rs12693105	1.00[CHB][hapmap]
rs13005005	1.00[JPT][hapmap]
rs13421731	1.00[JPT][hapmap]
rs1355845	1.00[JPT][hapmap]
rs1437725	1.00[CHB][hapmap]
rs1513870	1.00[JPT][hapmap]
rs1513886	1.00[CHB][hapmap]
rs1533303	1.00[CHB][hapmap]
rs1534472	1.00[CHB][hapmap]
rs1545138	1.00[CHB][hapmap]
rs16864479	1.00[CHB][hapmap]
rs16864736	1.00[JPT][hapmap]
rs17628074	1.00[JPT][hapmap]
rs17679370	1.00[JPT][hapmap]
rs1866134	1.00[JPT][hapmap]
rs4893917	1.00[CHB][hapmap]
rs6707899	1.00[JPT][hapmap]
rs6760271	1.00[JPT][hapmap]
rs7588841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs840685	0.94[ASN][1000 genomes]
rs840698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs840699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs840700	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs840701	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs840702	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs840703	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs840704	0.88[ASN][1000 genomes]
rs858958	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs860864	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177678200-177683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:177678600-177683200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:177679000-177683400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:177679600-177683000	Weak transcription	Fetal Lung	lung
5	chr2:177680000-177689000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:177680200-177689000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:177681400-177683400	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:177681600-177684200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:177681600-177684400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:177681600-177684400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:177681600-177684400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:177681600-177684400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:177681600-177684600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:177681600-177684600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:177681600-177685200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr2:177682000-177684800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:177682000-177689000	Weak transcription	Primary T cells from cord blood	blood
18	chr2:177682200-177682800	Weak transcription	Fetal Kidney	kidney
19	chr2:177682200-177683400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:177682200-177683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:177682200-177684400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr2:177682400-177685800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:177682600-177683000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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